-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2395

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 927, 977
Couldn't classify 1237, 1299
Sorry, prediction GeneMark_model.110302_t fails validation.
(GGA)	 AG	927-977	GT	CAG
(TGA)	 AG	1094-1138	GT	CAG
(TGA)	 AG	1163-1207	GT	CAG
(GGC)	 AG	1237-1299	GT	CAG
-recovered GeneMark_model.110302_t, internal, 927, 977
-recovered GeneMark_model.110302_t, internal, 1094, 1138
-recovered GeneMark_model.110302_t, internal, 1163, 1207
-recovered GeneMark_model.110302_t, internal, 1237, 1299

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1321
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support