-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2393

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1062, 1136
Sorry, prediction snap_scaffold_2393-snap.1-T1 fails validation.
(ATG)	 GG	311-482	GT	CAG
(ACT)	 AG	1062-1136	GT	CAG
-recovered snap_scaffold_2393-snap.1-T1, initial, 311, 482
-recovered snap_scaffold_2393-snap.1-T1, internal, 1062, 1136

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 61, 108
Sorry, prediction GeneMark_model.110300_t fails validation.
(AGG)	 AG	61-108	GC	GGG
(AGA)	 AG	132-299	GT	CTG
(AGA)	 AG	562-645	GT	GGG
(AAA)	 AG	668-688	GC	AGG
(AGA)	 AG	713-766	GC	GGG
(TGG)	 AG	792-940	GT	GAG
add_exon() Sorry, GeneMark_model.110300_t 792-940-terminal-2 is invalid.
-recovered GeneMark_model.110300_t, terminal, 792, 940
-recovered GeneMark_model.110300_t, internal, 61, 108
-recovered GeneMark_model.110300_t, internal, 132, 299
-recovered GeneMark_model.110300_t, internal, 562, 645
-recovered GeneMark_model.110300_t, internal, 668, 688
-recovered GeneMark_model.110300_t, internal, 713, 766
-recovered GeneMark_model.110300_t, internal, 792, 940

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1323
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support