-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2392

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 41, 52
Couldn't classify 1265, 1304
Sorry, prediction GeneMark_model.110299_t fails validation.
(CGG)	 AG	41-52	GT	AGG
(TTG)	 AG	432-456	GT	AGG
(CCA)	 AG	491-508	GT	AGG
(GCA)	 AG	554-565	GT	AGG
(CGA)	 AG	1051-1175	GT	CGG
(GGC)	 AG	1208-1229	GT	GGG
(GGA)	 AG	1265-1304	GT	GGG
-recovered GeneMark_model.110299_t, internal, 41, 52
-recovered GeneMark_model.110299_t, internal, 432, 456
-recovered GeneMark_model.110299_t, internal, 491, 508
-recovered GeneMark_model.110299_t, internal, 554, 565
-recovered GeneMark_model.110299_t, internal, 1051, 1175
-recovered GeneMark_model.110299_t, internal, 1208, 1229
-recovered GeneMark_model.110299_t, internal, 1265, 1304

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63103-T1
Couldn't classify 93, 242
Sorry, prediction snap_scaffold_2392-snap.1-T1 fails validation.
(ACC)	 AG	93-242	GT	AGG
(CAG)	 AG	281-326	GT	TGG
(AAC)	 AG	609-929	GT	AGG
(CCT)	 AG	996-1042	AA	AAA
-recovered snap_scaffold_2392-snap.1-T1, terminal, 996, 1042
-recovered snap_scaffold_2392-snap.1-T1, internal, 93, 242
-recovered snap_scaffold_2392-snap.1-T1, internal, 281, 326
-recovered snap_scaffold_2392-snap.1-T1, internal, 609, 929
Couldn't classify 103, 242
Couldn't classify 800, 929
Sorry, prediction Augustus_model.g42061.t1 fails validation.
(CAG)	 AG	103-242	GT	AGG
(CAT)	 AG	800-929	GT	AGG
-recovered Augustus_model.g42061.t1, internal, 103, 242
-recovered Augustus_model.g42061.t1, internal, 800, 929

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1323
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support