-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2388

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 191, 394
Sorry, prediction GeneMark_model.110296_t fails validation.
(ACA)	 AG	191-394	GT	GCG
(AAC)	 AG	688-745	AG	AAA
-recovered GeneMark_model.110296_t, terminal, 688, 745
-recovered GeneMark_model.110296_t, internal, 191, 394

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 108, 152
Couldn't classify 861, 976
Sorry, prediction Augustus_model.g42058.t1 fails validation.
(ATC)	 AG	108-152	GT	CAG
(AGG)	 AG	364-467	GT	CTG
(GTG)	 AG	861-976	GT	CAG
-recovered Augustus_model.g42058.t1, internal, 108, 152
-recovered Augustus_model.g42058.t1, internal, 364, 467
-recovered Augustus_model.g42058.t1, internal, 861, 976
Couldn't classify 861, 976
Sorry, prediction snap_scaffold_2388-snap.1-T1 fails validation.
(ATG)	 AG	45-117	GT	TGG
(AGG)	 AG	364-467	GT	CTG
(GTG)	 AG	861-976	GT	CAG
-recovered snap_scaffold_2388-snap.1-T1, initial, 45, 117
-recovered snap_scaffold_2388-snap.1-T1, internal, 45, 117
-recovered snap_scaffold_2388-snap.1-T1, internal, 364, 467
-recovered snap_scaffold_2388-snap.1-T1, internal, 861, 976
Couldn't classify 364, 467
Sorry, prediction GlimmerHMM_glimmerT_63100-T1 fails validation.
(AGG)	 AG	364-467	GT	CTG
(GTG)	 AG	861-980	GT	AAG
-recovered GlimmerHMM_glimmerT_63100-T1, terminal, 861, 980
-recovered GlimmerHMM_glimmerT_63100-T1, internal, 364, 467
-recovered GlimmerHMM_glimmerT_63100-T1, internal, 861, 980

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1326
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support