-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2387

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63099-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63099-T1 982-1168-terminal-1 is invalid.
Couldn't classify 982, 1160
Sorry, prediction snap_scaffold_2387-snap.1-T1 fails validation.
(ATG)	 AA	442-458	GT	ATG
(GTT)	 AG	982-1160	GT	CAG
-recovered snap_scaffold_2387-snap.1-T1, initial, 442, 458
-recovered snap_scaffold_2387-snap.1-T1, internal, 982, 1160
Valid prediction for GeneMark_model.110295_t
Valid prediction for Augustus_model.g42057.t1
add_exon() Sorry, Augustus_model.g42057.t1 982-1168-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110294_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1326
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support