-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2384

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 95, 287
Sorry, prediction GlimmerHMM_glimmerT_63098-T1 fails validation.
(GTA)	 AG	95-287	GT	AGG
(GAG)	 AG	473-700	GT	AGG
-recovered GlimmerHMM_glimmerT_63098-T1, terminal, 473, 700
-recovered GlimmerHMM_glimmerT_63098-T1, internal, 95, 287
-recovered GlimmerHMM_glimmerT_63098-T1, internal, 473, 700
Couldn't classify 95, 287
Sorry, prediction Augustus_model.g42056.t1 fails validation.
(GTA)	 AG	95-287	GT	AGG
(GAG)	 AG	473-700	GT	AGG
-recovered Augustus_model.g42056.t1, terminal, 473, 700
-recovered Augustus_model.g42056.t1, internal, 95, 287
-recovered Augustus_model.g42056.t1, internal, 473, 700
Couldn't classify 95, 287
Sorry, prediction GeneMark_model.110293_t fails validation.
(GTA)	 AG	95-287	GT	AGG
(GAG)	 AG	473-700	GT	AGG
-recovered GeneMark_model.110293_t, terminal, 473, 700
-recovered GeneMark_model.110293_t, internal, 95, 287
-recovered GeneMark_model.110293_t, internal, 473, 700
Couldn't classify 95, 287
Sorry, prediction snap_scaffold_2384-snap.1-T1 fails validation.
(GTA)	 AG	95-287	GT	AGG
(GAG)	 AG	473-700	GT	AGG
-recovered snap_scaffold_2384-snap.1-T1, terminal, 473, 700
-recovered snap_scaffold_2384-snap.1-T1, internal, 95, 287
-recovered snap_scaffold_2384-snap.1-T1, internal, 473, 700
Couldn't classify 129, 287
Couldn't classify 473, 667
Sorry, prediction pasa_asmbl_32006.p2 fails validation.
(ACC)	 CC	129-287	GT	AGG
(GAG)	 AG	473-667	GA	AGG

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1330
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support