-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2382

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 323, 438
Couldn't classify 1224, 1333
Sorry, prediction Augustus_model.g42055.t1 fails validation.
(CAC)	 AG	323-438	GT	TGG
(GAA)	 AG	661-734	GT	AGG
(GTG)	 AG	815-911	GT	GGG
(ATG)	 AG	990-1129	GT	GGG
(CAC)	 AG	1224-1333		GT
add_exon() Sorry, Augustus_model.g42055.t1 990-1129-initial-1 is invalid.
-recovered Augustus_model.g42055.t1, initial, 990, 1129
-recovered Augustus_model.g42055.t1, internal, 323, 438
-recovered Augustus_model.g42055.t1, internal, 661, 734
-recovered Augustus_model.g42055.t1, internal, 815, 911
-recovered Augustus_model.g42055.t1, internal, 990, 1129
Couldn't classify 323, 438
Couldn't classify 1224, 1304
Sorry, prediction snap_scaffold_2382-snap.1-T1 fails validation.
(CAC)	 AG	323-438	GT	TGG
(GAA)	 AG	661-734	GT	AGG
(GTG)	 AG	815-911	GT	GGG
(ATG)	 AG	990-1129	GT	GGG
(CAC)	 AG	1224-1304	GT	AGG
add_exon() Sorry, snap_scaffold_2382-snap.1-T1 990-1129-initial-1 is invalid.
-recovered snap_scaffold_2382-snap.1-T1, initial, 990, 1129
-recovered snap_scaffold_2382-snap.1-T1, internal, 323, 438
-recovered snap_scaffold_2382-snap.1-T1, internal, 661, 734
-recovered snap_scaffold_2382-snap.1-T1, internal, 815, 911
-recovered snap_scaffold_2382-snap.1-T1, internal, 990, 1129
-recovered snap_scaffold_2382-snap.1-T1, internal, 1224, 1304
Valid prediction for GlimmerHMM_glimmerT_63097-T1
Couldn't classify 660, 734
Couldn't classify 1224, 1304
Sorry, prediction pasa_asmbl_32004.p1 fails validation.
(GGA)	 CA	660-734	GT	AGG
(GTG)	 AG	815-911	GT	GGG
(ATG)	 AG	990-1129	GT	GGG
(CAC)	 AG	1224-1304	GT	AGG
add_exon() Sorry, pasa_asmbl_32004.p1 990-1129-initial-1 is invalid.
-recovered pasa_asmbl_32004.p1, initial, 990, 1129
-recovered pasa_asmbl_32004.p1, internal, 815, 911
-recovered pasa_asmbl_32004.p1, internal, 990, 1129
-recovered pasa_asmbl_32004.p1, internal, 1224, 1304
Couldn't classify 661, 729
Couldn't classify 1224, 1324
Sorry, prediction GeneMark_model.110291_t fails validation.
(GAA)	 AG	661-729	GT	TGG
(GTG)	 AG	815-911	GT	GGG
(ATG)	 AG	990-1129	GT	GGG
(CAC)	 AG	1224-1324	GC	ATG
add_exon() Sorry, GeneMark_model.110291_t 990-1129-initial-1 is invalid.
-recovered GeneMark_model.110291_t, initial, 990, 1129
-recovered GeneMark_model.110291_t, internal, 661, 729
-recovered GeneMark_model.110291_t, internal, 815, 911
-recovered GeneMark_model.110291_t, internal, 990, 1129
-recovered GeneMark_model.110291_t, internal, 1224, 1324

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1333
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support