-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2381

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 116, 252
Sorry, prediction GeneMark_model.110289_t fails validation.
(CCC)	 AG	116-252	GT	CAG
(AGC)	 AG	350-457	CC	AGC
-recovered GeneMark_model.110289_t, terminal, 350, 457
-recovered GeneMark_model.110289_t, internal, 116, 252
Valid prediction for Augustus_model.g42054.t1
Couldn't classify 699, 801
Sorry, prediction GlimmerHMM_glimmerT_63096-T1 fails validation.
(ATG)	 GA	329-445	GT	TGG
(CCT)	 AG	699-801	GT	CTG
-recovered GlimmerHMM_glimmerT_63096-T1, initial, 329, 445
-recovered GlimmerHMM_glimmerT_63096-T1, internal, 699, 801
Couldn't classify 350, 445
Couldn't classify 699, 801
Sorry, prediction snap_scaffold_2381-snap.1-T1 fails validation.
(AGC)	 AG	350-445	GT	TGG
(CCT)	 AG	699-801	GT	CTG
-recovered snap_scaffold_2381-snap.1-T1, internal, 350, 445
-recovered snap_scaffold_2381-snap.1-T1, internal, 699, 801

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 37, 84
Sorry, prediction GeneMark_model.110290_t fails validation.
(GGC)	 AG	37-84	GT	CAG
(GTC)	 AG	105-114	GT	AGG
(GCA)	 AG	152-177	GT	CTG
(GAG)	 AG	363-385	GT	GGG
(AAG)	 AG	413-499	GT	AGG
(ATG)	 AG	535-538	TG	GAT
-recovered GeneMark_model.110290_t, terminal, 535, 538
-recovered GeneMark_model.110290_t, internal, 37, 84
-recovered GeneMark_model.110290_t, internal, 105, 114
-recovered GeneMark_model.110290_t, internal, 152, 177
-recovered GeneMark_model.110290_t, internal, 363, 385
-recovered GeneMark_model.110290_t, internal, 413, 499

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1333
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support