-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2380

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1169, 1230
Sorry, prediction GeneMark_model.110288_t fails validation.
(ATG)	 TG	250-254	GT	TGG
(CAT)	 AG	345-489	GT	AGG
(AGA)	 AG	530-535	GT	AGG
(AGA)	 AG	586-591	GT	AGG
(AGA)	 AG	683-688	GT	AGG
(GGC)	 AG	968-1054	GT	CAG
(GAG)	 AG	1169-1230	GT	AGG
-recovered GeneMark_model.110288_t, initial, 250, 254
-recovered GeneMark_model.110288_t, internal, 345, 489
-recovered GeneMark_model.110288_t, internal, 530, 535
-recovered GeneMark_model.110288_t, internal, 586, 591
-recovered GeneMark_model.110288_t, internal, 683, 688
-recovered GeneMark_model.110288_t, internal, 968, 1054
-recovered GeneMark_model.110288_t, internal, 1169, 1230
Couldn't classify 343, 489
Couldn't classify 1169, 1230
Sorry, prediction Augustus_model.g42053.t1 fails validation.
(AGC)	 AG	343-489	GT	AGG
(GGC)	 AG	968-1054	GT	CAG
(GAG)	 AG	1169-1230	GT	AGG
-recovered Augustus_model.g42053.t1, internal, 343, 489
-recovered Augustus_model.g42053.t1, internal, 968, 1054
-recovered Augustus_model.g42053.t1, internal, 1169, 1230
Couldn't classify 1169, 1230
Sorry, prediction GlimmerHMM_glimmerT_63095-T1 fails validation.
(ATG)	 GC	346-489	GT	AGG
(GGC)	 AG	968-1054	GT	CAG
(GAG)	 AG	1169-1230	GT	AGG
-recovered GlimmerHMM_glimmerT_63095-T1, initial, 346, 489
-recovered GlimmerHMM_glimmerT_63095-T1, internal, 968, 1054
-recovered GlimmerHMM_glimmerT_63095-T1, internal, 1169, 1230

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1334
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support