-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_238

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9012, 9147
Sorry, prediction Augustus_model.g40931.t1 fails validation.
(ATG)	 TC	8680-8685	GT	AGG
(GTG)	 AG	9012-9147	GT	TGG
-recovered Augustus_model.g40931.t1, initial, 8680, 8685
-recovered Augustus_model.g40931.t1, internal, 9012, 9147
Couldn't classify 9012, 9125
Sorry, prediction GlimmerHMM_glimmerT_61553-T1 fails validation.
(ATG)	 AC	68-91	GT	AGG
(GTG)	 AG	9012-9125	GT	TGG
-recovered GlimmerHMM_glimmerT_61553-T1, initial, 68, 91
-recovered GlimmerHMM_glimmerT_61553-T1, internal, 9012, 9125
Couldn't classify 9012, 9147
Sorry, prediction GeneMark_model.107037_t fails validation.
(ATG)	 GC	5840-5847	GT	TTG
(GGC)	 AG	6130-6168	GT	GAG
(GGT)	 AG	6402-6416	GT	GAG
(ACC)	 AG	6441-6446	GT	GAG
(ATG)	 AG	6468-6485	GT	GTG
(AGA)	 AG	6634-6675	GT	GAG
(GGG)	 AG	8221-8325	GT	ATG
(GAT)	 AG	8348-8395	GT	GGG
(GGA)	 AG	8504-8513	GT	GGG
(GTG)	 AG	9012-9147	GT	TGG
-recovered GeneMark_model.107037_t, initial, 5840, 5847
-recovered GeneMark_model.107037_t, initial, 6468, 6485
-recovered GeneMark_model.107037_t, terminal, 6634, 6675
-recovered GeneMark_model.107037_t, internal, 6130, 6168
-recovered GeneMark_model.107037_t, internal, 6402, 6416
-recovered GeneMark_model.107037_t, internal, 6441, 6446
-recovered GeneMark_model.107037_t, internal, 6468, 6485
-recovered GeneMark_model.107037_t, internal, 6634, 6675
-recovered GeneMark_model.107037_t, internal, 8221, 8325
-recovered GeneMark_model.107037_t, internal, 8348, 8395
-recovered GeneMark_model.107037_t, internal, 8504, 8513
-recovered GeneMark_model.107037_t, internal, 9012, 9147
Couldn't classify 39, 91
Sorry, prediction GeneMark_model.107036_t fails validation.
(CTC)	 AG	39-91	GT	AGG
(AGA)	 AG	345-368	GT	GGG
(AAA)	 AG	720-794	GT	GCG
(GGA)	 AG	904-1038	GT	GAG
(AGA)	 AG	2542-2624	GT	AGG
(CCA)	 AG	2741-2820	CG	AAC
-recovered GeneMark_model.107036_t, terminal, 2741, 2820
-recovered GeneMark_model.107036_t, internal, 39, 91
-recovered GeneMark_model.107036_t, internal, 345, 368
-recovered GeneMark_model.107036_t, internal, 720, 794
-recovered GeneMark_model.107036_t, internal, 904, 1038
-recovered GeneMark_model.107036_t, internal, 2542, 2624

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9212
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support