-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2379

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 427, 525
Couldn't classify 731, 979
Sorry, prediction snap_scaffold_2379-snap.2-T1 fails validation.
(CTT)	 AG	427-525	GT	ACG
(GGC)	 AG	731-979	GT	AGG
-recovered snap_scaffold_2379-snap.2-T1, internal, 427, 525
-recovered snap_scaffold_2379-snap.2-T1, internal, 731, 979
Couldn't classify 731, 979
Sorry, prediction GlimmerHMM_glimmerT_63094-T1 fails validation.
(ATG)	 TC	415-525	GT	ACG
(GGC)	 AG	731-979	GT	AGG
-recovered GlimmerHMM_glimmerT_63094-T1, initial, 415, 525
-recovered GlimmerHMM_glimmerT_63094-T1, internal, 731, 979
Couldn't classify 427, 525
Couldn't classify 731, 979
Sorry, prediction Augustus_model.g42052.t1 fails validation.
(CTT)	 AG	427-525	GT	ACG
(GGC)	 AG	731-979	GT	AGG
-recovered Augustus_model.g42052.t1, internal, 427, 525
-recovered Augustus_model.g42052.t1, internal, 731, 979

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 37, 75
Couldn't classify 822, 980
Sorry, prediction GeneMark_model.110287_t fails validation.
(GAG)	 AG	37-75	GC	GGG
(GAG)	 AG	99-308	GT	GAG
(GGA)	 AG	332-395	GT	CGG
(CAG)	 AG	546-613	GT	CAG
(GCA)	 AG	822-980	GT	AGG
-recovered GeneMark_model.110287_t, internal, 37, 75
-recovered GeneMark_model.110287_t, internal, 99, 308
-recovered GeneMark_model.110287_t, internal, 332, 395
-recovered GeneMark_model.110287_t, internal, 546, 613
-recovered GeneMark_model.110287_t, internal, 822, 980
Valid prediction for snap_scaffold_2379-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1335
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support