-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2378

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 367, 460
Couldn't classify 1297, 1326
Sorry, prediction GeneMark_model.110286_t fails validation.
(GAA)	 AG	367-460	GT	ACG
(GCC)	 AG	1220-1226	GT	CGG
(AAG)	 AG	1254-1259	GT	AGG
(TAA)	 AG	1297-1326	GT	GGG
-recovered GeneMark_model.110286_t, internal, 367, 460
-recovered GeneMark_model.110286_t, internal, 1220, 1226
-recovered GeneMark_model.110286_t, internal, 1254, 1259
-recovered GeneMark_model.110286_t, internal, 1297, 1326
Couldn't classify 367, 460
Couldn't classify 1220, 1326
Sorry, prediction snap_scaffold_2378-snap.1-T1 fails validation.
(GAA)	 AG	367-460	GT	ACG
(GCC)	 AG	1220-1326	GT	GGG
-recovered snap_scaffold_2378-snap.1-T1, internal, 367, 460
-recovered snap_scaffold_2378-snap.1-T1, internal, 1220, 1326

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1335
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support