-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2373

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 135, 178
Couldn't classify 1184, 1279
Sorry, prediction Augustus_model.g42051.t1 fails validation.
(GAT)	 AG	135-178	GT	AGG
(ACA)	 AG	351-407	GT	TGG
(CAG)	 AG	498-561	GT	GCG
(TCT)	 AG	1184-1279	GT	AAG
-recovered Augustus_model.g42051.t1, internal, 135, 178
-recovered Augustus_model.g42051.t1, internal, 351, 407
-recovered Augustus_model.g42051.t1, internal, 498, 561
-recovered Augustus_model.g42051.t1, internal, 1184, 1279
Couldn't classify 351, 407
Sorry, prediction GlimmerHMM_glimmerT_63092-T1 fails validation.
(ACA)	 AG	351-407	GT	TGG
(CAG)	 AG	498-561	GT	GCG
(TCT)	 AG	1184-1283	GT	AGG
-recovered GlimmerHMM_glimmerT_63092-T1, terminal, 1184, 1283
-recovered GlimmerHMM_glimmerT_63092-T1, internal, 351, 407
-recovered GlimmerHMM_glimmerT_63092-T1, internal, 498, 561
-recovered GlimmerHMM_glimmerT_63092-T1, internal, 1184, 1283
Couldn't classify 64, 178
Sorry, prediction GeneMark_model.110281_t fails validation.
(GAC)	 AG	64-178	GT	AGG
(CAG)	 AG	498-565	GT	GAG
-recovered GeneMark_model.110281_t, terminal, 498, 565
-recovered GeneMark_model.110281_t, internal, 64, 178
-recovered GeneMark_model.110281_t, internal, 498, 565
Couldn't classify 64, 178
Couldn't classify 1184, 1279
Sorry, prediction snap_scaffold_2373-snap.1-T1 fails validation.
(GAC)	 AG	64-178	GT	AGG
(ACA)	 AG	351-407	GT	TGG
(ATG)	 AG	501-561	GT	GCG
(TCT)	 AG	1184-1279	GT	AAG
-recovered snap_scaffold_2373-snap.1-T1, initial, 501, 561
-recovered snap_scaffold_2373-snap.1-T1, internal, 64, 178
-recovered snap_scaffold_2373-snap.1-T1, internal, 351, 407
-recovered snap_scaffold_2373-snap.1-T1, internal, 501, 561
-recovered snap_scaffold_2373-snap.1-T1, internal, 1184, 1279

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1339
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support