-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2371

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g42049.t1
add_exon() Sorry, Augustus_model.g42049.t1 608-725-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_63091-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 286, 291
Sorry, prediction GeneMark_model.110280_t fails validation.
(AGA)	 AG	286-291	GC	AGG
(GTT)	 AG	395-560	CC	GAC
-recovered GeneMark_model.110280_t, terminal, 395, 560
-recovered GeneMark_model.110280_t, internal, 286, 291
Valid prediction for Augustus_model.g42050.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1341
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support