-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2370

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 327, 422
Sorry, prediction snap_scaffold_2370-snap.1-T1 fails validation.
(ATC)	 AG	327-422	GT	GGG
(GGA)	 AG	658-1141	AG	GAA
-recovered snap_scaffold_2370-snap.1-T1, terminal, 658, 1141
-recovered snap_scaffold_2370-snap.1-T1, internal, 327, 422
Couldn't classify 371, 422
Couldn't classify 1273, 1302
Sorry, prediction GeneMark_model.110279_t fails validation.
(CTC)	 AG	371-422	GT	GGG
(ACA)	 AG	448-552	GT	CAG
(TGA)	 AG	576-596	GT	CAG
(AGA)	 AG	618-638	GT	GTG
(AGT)	 AG	674-703	GT	GAG
(GGA)	 AG	725-892	GT	GAG
(AGA)	 AG	917-946	GT	GAG
(AGT)	 AG	968-997	GT	GAG
(AGA)	 AG	1026-1037	GT	GAG
(GGA)	 AG	1059-1097	GT	GAG
(GGA)	 AG	1121-1195	GT	GAG
(AGA)	 AG	1222-1251	GT	GAG
(AGG)	 AG	1273-1302	GT	GAG
-recovered GeneMark_model.110279_t, internal, 371, 422
-recovered GeneMark_model.110279_t, internal, 448, 552
-recovered GeneMark_model.110279_t, internal, 576, 596
-recovered GeneMark_model.110279_t, internal, 618, 638
-recovered GeneMark_model.110279_t, internal, 674, 703
-recovered GeneMark_model.110279_t, internal, 725, 892
-recovered GeneMark_model.110279_t, internal, 917, 946
-recovered GeneMark_model.110279_t, internal, 968, 997
-recovered GeneMark_model.110279_t, internal, 1026, 1037
-recovered GeneMark_model.110279_t, internal, 1059, 1097
-recovered GeneMark_model.110279_t, internal, 1121, 1195
-recovered GeneMark_model.110279_t, internal, 1222, 1251
-recovered GeneMark_model.110279_t, internal, 1273, 1302

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1342
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support