-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_237

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2194, 2336
Sorry, prediction snap_scaffold_237-snap.2-T1 fails validation.
(GAG)	 AG	2194-2336	GT	AGG
(GAG)	 AG	4852-5059	GT	AAG
(CTT)	 AG	6484-6708	GT	AGG
(TTA)	 AG	7741-7797	CG	GAC
-recovered snap_scaffold_237-snap.2-T1, terminal, 7741, 7797
-recovered snap_scaffold_237-snap.2-T1, internal, 2194, 2336
-recovered snap_scaffold_237-snap.2-T1, internal, 4852, 5059
-recovered snap_scaffold_237-snap.2-T1, internal, 6484, 6708
Couldn't classify 6492, 6708
Sorry, prediction GlimmerHMM_glimmerT_61552-T1 fails validation.
(ATG)	 GG	5172-5218	GT	GAG
(TGA)	 AG	6492-6708	GT	AGG
-recovered GlimmerHMM_glimmerT_61552-T1, initial, 5172, 5218
-recovered GlimmerHMM_glimmerT_61552-T1, internal, 6492, 6708
Valid prediction for GeneMark_model.107034_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 8856, 8878
Sorry, prediction GeneMark_model.107033_t fails validation.
(ATG)	 AT	7044-7132	GT	CAG
(AGG)	 AG	7200-7421	GC	GAG
(ACA)	 AG	7445-7546	GT	GGG
(GAG)	 AG	8595-8609	GT	GGG
(GAG)	 AG	8648-8662	GT	GGG
(AAT)	 AG	8689-8694	GT	GGG
(GAG)	 AG	8716-8724	GT	AGG
(TGG)	 AG	8747-8833	GT	GAG
(GTT)	 AG	8856-8878	GT	CAG
-recovered GeneMark_model.107033_t, initial, 7044, 7132
-recovered GeneMark_model.107033_t, terminal, 8747, 8833
-recovered GeneMark_model.107033_t, internal, 7200, 7421
-recovered GeneMark_model.107033_t, internal, 7445, 7546
-recovered GeneMark_model.107033_t, internal, 8595, 8609
-recovered GeneMark_model.107033_t, internal, 8648, 8662
-recovered GeneMark_model.107033_t, internal, 8689, 8694
-recovered GeneMark_model.107033_t, internal, 8716, 8724
-recovered GeneMark_model.107033_t, internal, 8747, 8833
-recovered GeneMark_model.107033_t, internal, 8856, 8878
Couldn't classify 1614, 1622
Sorry, prediction GeneMark_model.107035_t fails validation.
(AGA)	 AG	1614-1622	GT	GAG
(AAT)	 AG	2158-2313	GT	GGG
(AGT)	 AG	2335-2524	GT	TGG
(CCT)	 AG	2623-2693	GT	GCG
(GGA)	 AG	2764-2803	CA	AAC
-recovered GeneMark_model.107035_t, terminal, 2764, 2803
-recovered GeneMark_model.107035_t, internal, 1614, 1622
-recovered GeneMark_model.107035_t, internal, 2158, 2313
-recovered GeneMark_model.107035_t, internal, 2335, 2524
-recovered GeneMark_model.107035_t, internal, 2623, 2693
Valid prediction for snap_scaffold_237-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9213
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support