-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2368

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 269, 307
Couldn't classify 1294, 1322
Sorry, prediction GeneMark_model.110278_t fails validation.
(GGA)	 AG	269-307	GT	TTG
(AGT)	 AG	364-378	GT	GTG
(AGA)	 AG	406-420	GT	GAG
(AGA)	 AG	456-464	GT	GTG
(AAA)	 AG	524-580	GT	GAG
(TGA)	 AG	614-640	GT	GAG
(AGT)	 AG	672-686	GT	GAG
(AGA)	 AG	714-794	GT	GGG
(GGA)	 AG	1264-1272	GT	GAG
(AGA)	 AG	1294-1322	GT	GAG
-recovered GeneMark_model.110278_t, internal, 269, 307
-recovered GeneMark_model.110278_t, internal, 364, 378
-recovered GeneMark_model.110278_t, internal, 406, 420
-recovered GeneMark_model.110278_t, internal, 456, 464
-recovered GeneMark_model.110278_t, internal, 524, 580
-recovered GeneMark_model.110278_t, internal, 614, 640
-recovered GeneMark_model.110278_t, internal, 672, 686
-recovered GeneMark_model.110278_t, internal, 714, 794
-recovered GeneMark_model.110278_t, internal, 1264, 1272
-recovered GeneMark_model.110278_t, internal, 1294, 1322

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1343
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support