-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2367

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 261, 322
Couldn't classify 1231, 1323
Sorry, prediction GeneMark_model.110277_t fails validation.
(CTT)	 AG	261-322	GT	AGG
(CAG)	 AG	655-773	GT	GTG
(GGC)	 AG	1231-1323	GC	CTG
-recovered GeneMark_model.110277_t, internal, 261, 322
-recovered GeneMark_model.110277_t, internal, 655, 773
-recovered GeneMark_model.110277_t, internal, 1231, 1323
Couldn't classify 261, 322
Sorry, prediction GlimmerHMM_glimmerT_63090-T1 fails validation.
(CTT)	 AG	261-322	GT	AGG
(CAG)	 AG	655-777	GG	GAG
-recovered GlimmerHMM_glimmerT_63090-T1, terminal, 655, 777
-recovered GlimmerHMM_glimmerT_63090-T1, internal, 261, 322
Couldn't classify 261, 322
Sorry, prediction snap_scaffold_2367-snap.1-T1 fails validation.
(CTT)	 AG	261-322	GT	AGG
(GAA)	 AG	658-777	GG	GAG
-recovered snap_scaffold_2367-snap.1-T1, terminal, 658, 777
-recovered snap_scaffold_2367-snap.1-T1, internal, 261, 322
Valid prediction for CodingQuarry_transcript_35756-T1
Valid prediction for CodingQuarry_transcript_35755-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1343
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support