-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2366

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63088-T1
Couldn't classify 98, 752
Couldn't classify 1074, 1255
Sorry, prediction snap_scaffold_2366-snap.1-T1 fails validation.
(CTG)	 AG	98-752	GT	TGG
(ACA)	 AG	1074-1255	GT	AGG
-recovered snap_scaffold_2366-snap.1-T1, internal, 98, 752
-recovered snap_scaffold_2366-snap.1-T1, internal, 1074, 1255
Couldn't classify 590, 752
Sorry, prediction Augustus_model.g42048.t1 fails validation.
(GGT)	 AG	590-752	GT	TGG
(ACA)	 AG	1074-1294	GA	AGG
-recovered Augustus_model.g42048.t1, terminal, 1074, 1294
-recovered Augustus_model.g42048.t1, internal, 590, 752
Couldn't classify 1074, 1255
Sorry, prediction GlimmerHMM_glimmerT_63089-T1 fails validation.
(ATG)	 TC	946-979	GT	AGG
(ACA)	 AG	1074-1255	GT	AGG
-recovered GlimmerHMM_glimmerT_63089-T1, initial, 946, 979
-recovered GlimmerHMM_glimmerT_63089-T1, internal, 1074, 1255
Couldn't classify 98, 756
Couldn't classify 1074, 1290
Sorry, prediction GeneMark_model.110276_t fails validation.
(CTG)	 AG	98-756	GT	GAG
(GGA)	 AG	783-848	GT	TGG
(GGC)	 AG	887-903	GT	GGG
(ACA)	 AG	1074-1290	GT	GGG
add_exon() Sorry, GeneMark_model.110276_t 98-756-terminal-2 is invalid.
-recovered GeneMark_model.110276_t, terminal, 98, 756
-recovered GeneMark_model.110276_t, internal, 98, 756
-recovered GeneMark_model.110276_t, internal, 783, 848
-recovered GeneMark_model.110276_t, internal, 887, 903
-recovered GeneMark_model.110276_t, internal, 1074, 1290

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1343
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support