-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2363

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 303, 383
Couldn't classify 817, 834
Sorry, prediction GeneMark_model.110274_t fails validation.
(AAG)	 AG	303-383	GT	AGG
(GAT)	 AG	418-441	GT	TGG
(GAT)	 AG	817-834	GT	ATG
-recovered GeneMark_model.110274_t, internal, 303, 383
-recovered GeneMark_model.110274_t, internal, 418, 441
-recovered GeneMark_model.110274_t, internal, 817, 834
Couldn't classify 248, 441
Sorry, prediction snap_scaffold_2363-snap.1-T1 fails validation.
(AGA)	 AG	248-441	GT	TGG
-recovered snap_scaffold_2363-snap.1-T1, internal, 248, 441
Valid prediction for GlimmerHMM_glimmerT_63087-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1345
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support