-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2362

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 51, 781
Sorry, prediction snap_scaffold_2362-snap.1-T1 fails validation.
(AGT)	 AG	51-781	GT	CAG
(GCT)	 AG	827-1254	AA	AAA
-recovered snap_scaffold_2362-snap.1-T1, terminal, 827, 1254
-recovered snap_scaffold_2362-snap.1-T1, internal, 51, 781
Couldn't classify 1, 819
Sorry, prediction GlimmerHMM_glimmerT_63086-T1 fails validation.
(TAC)	 CA	1-819	CA	AAC
Couldn't classify 12, 781
Sorry, prediction GeneMark_model.110273_t fails validation.
(CTC)	 AG	12-781	GT	CAG
(GCT)	 AG	827-1254	AA	AAA
-recovered GeneMark_model.110273_t, terminal, 827, 1254
-recovered GeneMark_model.110273_t, internal, 12, 781

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1348
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support