-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2361

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63084-T1
Couldn't classify 188, 296
Couldn't classify 950, 1326
Sorry, prediction GeneMark_model.110272_t fails validation.
(GTG)	 AG	188-296	GT	GGG
(AAG)	 AG	519-622	GT	AGG
(CCC)	 AG	950-1326	GT	AGG
-recovered GeneMark_model.110272_t, internal, 188, 296
-recovered GeneMark_model.110272_t, internal, 519, 622
-recovered GeneMark_model.110272_t, internal, 950, 1326
Valid prediction for GlimmerHMM_glimmerT_63085-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63085-T1 519-691-terminal-1 is invalid.
Couldn't classify 950, 1326
Sorry, prediction Augustus_model.g42046.t1 fails validation.
(ATG)	 TA	139-187	GT	AGG
(AAG)	 AG	519-622	GT	AGG
(CCC)	 AG	950-1326	GT	AGG
-recovered Augustus_model.g42046.t1, initial, 139, 187
-recovered Augustus_model.g42046.t1, internal, 519, 622
-recovered Augustus_model.g42046.t1, internal, 950, 1326
Couldn't classify 519, 622
Couldn't classify 950, 1326
Sorry, prediction snap_scaffold_2361-snap.1-T1 fails validation.
(AAG)	 AG	519-622	GT	AGG
(CCC)	 AG	950-1326	GT	AGG
-recovered snap_scaffold_2361-snap.1-T1, internal, 519, 622
-recovered snap_scaffold_2361-snap.1-T1, internal, 950, 1326

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1348
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support