-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2360

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 731, 869
Couldn't classify 1043, 1220
Sorry, prediction snap_scaffold_2360-snap.1-T1 fails validation.
(TCT)	 AG	731-869	GT	CCG
(AGA)	 AG	1043-1220	GT	AGG
-recovered snap_scaffold_2360-snap.1-T1, internal, 731, 869
-recovered snap_scaffold_2360-snap.1-T1, internal, 1043, 1220
Couldn't classify 731, 886
Couldn't classify 1043, 1220
Sorry, prediction Augustus_model.g42045.t1 fails validation.
(TCT)	 AG	731-886	GT	AGG
(AGA)	 AG	1043-1220	GT	AGG
-recovered Augustus_model.g42045.t1, internal, 731, 886
-recovered Augustus_model.g42045.t1, internal, 1043, 1220
Valid prediction for GlimmerHMM_glimmerT_63083-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63083-T1 731-885-terminal-1 is invalid.
Couldn't classify 731, 869
Couldn't classify 1043, 1220
Sorry, prediction GeneMark_model.110271_t fails validation.
(TCT)	 AG	731-869	GT	CCG
(GAG)	 AG	933-989	GT	GAG
(AGA)	 AG	1043-1220	GT	AGG
-recovered GeneMark_model.110271_t, internal, 731, 869
-recovered GeneMark_model.110271_t, internal, 933, 989
-recovered GeneMark_model.110271_t, internal, 1043, 1220

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1348
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support