-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2357

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 443, 506
Sorry, prediction GeneMark_model.110268_t fails validation.
(GTG)	 AG	443-506	GC	GGG
(AGA)	 AG	620-634	GT	GAG
(AGG)	 AG	657-669	GT	GAG
(ATT)	 AG	696-706	GT	GAG
(ACA)	 AG	728-778	GT	GAG
(AGG)	 AG	804-837	AG	AGA
-recovered GeneMark_model.110268_t, terminal, 804, 837
-recovered GeneMark_model.110268_t, internal, 443, 506
-recovered GeneMark_model.110268_t, internal, 620, 634
-recovered GeneMark_model.110268_t, internal, 657, 669
-recovered GeneMark_model.110268_t, internal, 696, 706
-recovered GeneMark_model.110268_t, internal, 728, 778

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 129, 365
Couldn't classify 1134, 1204
Sorry, prediction snap_scaffold_2357-snap.1-T1 fails validation.
(CTC)	 AG	129-365	GT	AGG
(GTC)	 AG	841-919	GT	AGG
(TTG)	 AG	1134-1204	GT	CGG
-recovered snap_scaffold_2357-snap.1-T1, internal, 129, 365
-recovered snap_scaffold_2357-snap.1-T1, internal, 841, 919
-recovered snap_scaffold_2357-snap.1-T1, internal, 1134, 1204
Couldn't classify 129, 365
Sorry, prediction GeneMark_model.110269_t fails validation.
(CTC)	 AG	129-365	GT	AGG
(AAC)	 AG	454-480	CA	AGC
-recovered GeneMark_model.110269_t, terminal, 454, 480
-recovered GeneMark_model.110269_t, internal, 129, 365
Couldn't classify 129, 348
Sorry, prediction GlimmerHMM_glimmerT_63081-T1 fails validation.
(CTC)	 AG	129-348	GT	CGG
(TTG)	 AG	1134-1210	TC	GAT
-recovered GlimmerHMM_glimmerT_63081-T1, terminal, 1134, 1210
-recovered GlimmerHMM_glimmerT_63081-T1, internal, 129, 348
Couldn't classify 129, 365
Sorry, prediction Augustus_model.g42044.t1 fails validation.
(CTC)	 AG	129-365	GT	AGG
(GTC)	 AG	841-955	GT	CTG
(TTG)	 AG	1134-1210	TC	GAT
-recovered Augustus_model.g42044.t1, terminal, 1134, 1210
-recovered Augustus_model.g42044.t1, internal, 129, 365
-recovered Augustus_model.g42044.t1, internal, 841, 955

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1353
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support