-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2353

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 64, 215
Sorry, prediction snap_scaffold_2353-snap.1-T1 fails validation.
(GTT)	 AG	64-215	GT	CTG
(CTC)	 AG	256-497	AT	GAA
-recovered snap_scaffold_2353-snap.1-T1, terminal, 256, 497
-recovered snap_scaffold_2353-snap.1-T1, internal, 64, 215
Valid prediction for GlimmerHMM_glimmerT_63080-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63080-T1 124-497-terminal-1 is invalid.
Couldn't classify 256, 357
Couldn't classify 1246, 1348
Sorry, prediction GeneMark_model.110265_t fails validation.
(CTC)	 AG	256-357	GT	CCG
(GAA)	 AG	1079-1212	GT	AAG
(AAG)	 AG	1246-1348	GC	CTG
-recovered GeneMark_model.110265_t, internal, 256, 357
-recovered GeneMark_model.110265_t, internal, 1079, 1212
-recovered GeneMark_model.110265_t, internal, 1246, 1348
Valid prediction for Augustus_model.g42043.t1
add_exon() Sorry, Augustus_model.g42043.t1 256-497-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1356
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support