-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2352

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63079-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63079-T1 709-1292-terminal-1 is invalid.
Couldn't classify 162, 242
Couldn't classify 1169, 1262
Sorry, prediction GeneMark_model.110264_t fails validation.
(GCT)	 AG	162-242	GT	CAG
(GAG)	 AG	333-452	GT	CAG
(ACT)	 AG	579-658	GT	CGG
(GGC)	 AG	823-955	GT	CTG
(AAA)	 AG	1092-1148	GT	ATG
(GCA)	 AG	1169-1262	GT	TGG
-recovered GeneMark_model.110264_t, internal, 162, 242
-recovered GeneMark_model.110264_t, internal, 333, 452
-recovered GeneMark_model.110264_t, internal, 579, 658
-recovered GeneMark_model.110264_t, internal, 823, 955
-recovered GeneMark_model.110264_t, internal, 1092, 1148
-recovered GeneMark_model.110264_t, internal, 1169, 1262
Couldn't classify 539, 658
Sorry, prediction Augustus_model.g42042.t1 fails validation.
(TTT)	 AG	539-658	GT	CGG
(GGC)	 AG	823-1016	GT	AGG
(AGA)	 AG	1188-1292	CG	GAC
-recovered Augustus_model.g42042.t1, terminal, 1188, 1292
-recovered Augustus_model.g42042.t1, internal, 539, 658
-recovered Augustus_model.g42042.t1, internal, 823, 1016
Couldn't classify 539, 658
Sorry, prediction snap_scaffold_2352-snap.1-T1 fails validation.
(TTT)	 AG	539-658	GT	CGG
(GTC)	 AG	709-1292	CG	GAC
-recovered snap_scaffold_2352-snap.1-T1, terminal, 709, 1292
-recovered snap_scaffold_2352-snap.1-T1, internal, 539, 658

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1357
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support