-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_235 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_235-snap.3-T1 add_exon() Sorry, snap_scaffold_235-snap.1-T1 1134-1354-single-1 is invalid. Valid prediction for GeneMark_model.107026_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61549-T1 Valid prediction for snap_scaffold_235-snap.4-T1 Valid prediction for GeneMark_model.107025_t Valid prediction for snap_scaffold_235-snap.2-T1 Couldn't classify 33, 104 Sorry, prediction GeneMark_model.107027_t fails validation. (AGA) AG 33-104 GT GAG (GAG) AG 536-724 GT GGG (AGG) AG 2714-2817 GT CGG (GAG) AG 3039-3093 GT AGG (AGA) AG 3119-3155 GT AGG (ATG) AG 3485-3514 CG AGC -recovered GeneMark_model.107027_t, terminal, 3485, 3514 -recovered GeneMark_model.107027_t, internal, 33, 104 -recovered GeneMark_model.107027_t, internal, 536, 724 -recovered GeneMark_model.107027_t, internal, 2714, 2817 -recovered GeneMark_model.107027_t, internal, 3039, 3093 -recovered GeneMark_model.107027_t, internal, 3119, 3155 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6625, rend_intergenic: 4170 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 9249 -exon list size: 30 building trellis 3.1 6.2 9.4 12.5 15.6 18.8 21.9 25.0 28.1 31.2 34.4 37.5 40.6 43.8 46.9 50.0 53.1 56.2 59.4 62.5 65.6 68.8 71.9 75.0 78.1 81.2 84.4 87.5 90.6 93.8 96.9 -found 3 predictions from path traversal Error with prediction: snap lend_intergenic: 6625, rend_intergenic: 4170 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 2 predictions persist after filtering for low support