-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2348

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 12, 94
Couldn't classify 810, 847
Sorry, prediction GeneMark_model.110261_t fails validation.
(AAG)	 AG	12-94	GT	GAG
(AAC)	 AG	126-188	GT	GAG
(GAG)	 AG	259-303	GT	AGG
(AGC)	 AG	323-343	GT	CCG
(AGA)	 AG	560-649	GT	AAG
(TCC)	 AG	810-847	GT	CCG
-recovered GeneMark_model.110261_t, internal, 12, 94
-recovered GeneMark_model.110261_t, internal, 126, 188
-recovered GeneMark_model.110261_t, internal, 259, 303
-recovered GeneMark_model.110261_t, internal, 323, 343
-recovered GeneMark_model.110261_t, internal, 560, 649
-recovered GeneMark_model.110261_t, internal, 810, 847

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1359
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support