-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2346

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 41, 146
Couldn't classify 1076, 1232
Sorry, prediction GeneMark_model.110260_t fails validation.
(GGA)	 AG	41-146	GT	CCG
(GCA)	 AG	434-673	GT	AGG
(CTT)	 AG	1076-1232	GT	TGG
-recovered GeneMark_model.110260_t, internal, 41, 146
-recovered GeneMark_model.110260_t, internal, 434, 673
-recovered GeneMark_model.110260_t, internal, 1076, 1232
Couldn't classify 434, 673
Couldn't classify 1076, 1232
Sorry, prediction Augustus_model.g42041.t1 fails validation.
(GCA)	 AG	434-673	GT	AGG
(CTT)	 AG	1076-1232	GT	TGG
-recovered Augustus_model.g42041.t1, internal, 434, 673
-recovered Augustus_model.g42041.t1, internal, 1076, 1232
Couldn't classify 1076, 1232
Sorry, prediction snap_scaffold_2346-snap.1-T1 fails validation.
(ATG)	 AA	106-264	GT	TGG
(GCA)	 AG	434-673	GT	AGG
(CTT)	 AG	1076-1232	GT	TGG
-recovered snap_scaffold_2346-snap.1-T1, initial, 106, 264
-recovered snap_scaffold_2346-snap.1-T1, internal, 434, 673
-recovered snap_scaffold_2346-snap.1-T1, internal, 1076, 1232
Couldn't classify 1076, 1232
Sorry, prediction GlimmerHMM_glimmerT_63078-T1 fails validation.
(ATG)	 CC	383-673	GT	AGG
(CTT)	 AG	1076-1232	GT	TGG
-recovered GlimmerHMM_glimmerT_63078-T1, initial, 383, 673
-recovered GlimmerHMM_glimmerT_63078-T1, internal, 1076, 1232

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1361
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support