-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2345

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 37, 147
Sorry, prediction GlimmerHMM_glimmerT_63077-T1 fails validation.
(AGT)	 AG	37-147	GT	ATG
(AGC)	 AG	811-897	GA	GAG
-recovered GlimmerHMM_glimmerT_63077-T1, terminal, 811, 897
-recovered GlimmerHMM_glimmerT_63077-T1, internal, 37, 147
Couldn't classify 37, 255
Couldn't classify 1279, 1354
Sorry, prediction GeneMark_model.110259_t fails validation.
(AGT)	 AG	37-255	GT	TGG
(TCT)	 AG	280-318	GT	TGG
(AGC)	 AG	811-893	GT	AGG
(GGG)	 AG	927-977	GC	GGG
(GAG)	 AG	1002-1052	GC	AGG
(GAA)	 AG	1079-1161	GT	CAG
(GGC)	 AG	1279-1354	GT	GGG
-recovered GeneMark_model.110259_t, internal, 37, 255
-recovered GeneMark_model.110259_t, internal, 280, 318
-recovered GeneMark_model.110259_t, internal, 811, 893
-recovered GeneMark_model.110259_t, internal, 927, 977
-recovered GeneMark_model.110259_t, internal, 1002, 1052
-recovered GeneMark_model.110259_t, internal, 1079, 1161
-recovered GeneMark_model.110259_t, internal, 1279, 1354
Couldn't classify 37, 267
Couldn't classify 811, 893
Sorry, prediction snap_scaffold_2345-snap.1-T1 fails validation.
(AGT)	 AG	37-267	GT	TGG
(AGC)	 AG	811-893	GT	AGG
-recovered snap_scaffold_2345-snap.1-T1, internal, 37, 267
-recovered snap_scaffold_2345-snap.1-T1, internal, 811, 893

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1362
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support