-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2342

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1043, 1186
Sorry, prediction Augustus_model.g42040.t1 fails validation.
(ATG)	 GT	57-142	GT	CAG
(AAC)	 AG	577-723	GT	AGG
(ATC)	 AG	1043-1186	GT	CGG
-recovered Augustus_model.g42040.t1, initial, 57, 142
add_exon() Sorry, Augustus_model.g42040.t1 577-723-terminal-1 is invalid.
-recovered Augustus_model.g42040.t1, terminal, 577, 723
-recovered Augustus_model.g42040.t1, internal, 577, 723
-recovered Augustus_model.g42040.t1, internal, 1043, 1186
Couldn't classify 1043, 1186
Sorry, prediction snap_scaffold_2342-snap.1-T1 fails validation.
(ATG)	 TA	829-884	GT	CAG
(ATC)	 AG	1043-1186	GT	CGG
-recovered snap_scaffold_2342-snap.1-T1, initial, 829, 884
-recovered snap_scaffold_2342-snap.1-T1, internal, 1043, 1186
Valid prediction for GlimmerHMM_glimmerT_63076-T1
Couldn't classify 75, 142
Couldn't classify 1043, 1186
Sorry, prediction GeneMark_model.110256_t fails validation.
(GTG)	 AG	75-142	GT	CAG
(GCG)	 AG	344-355	GT	GAG
(ATC)	 AG	1043-1186	GT	CGG
-recovered GeneMark_model.110256_t, internal, 75, 142
-recovered GeneMark_model.110256_t, internal, 344, 355
-recovered GeneMark_model.110256_t, internal, 1043, 1186

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1366
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support