-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_234

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107023_t
Valid prediction for GeneMark_model.107019_t
Valid prediction for GlimmerHMM_glimmerT_61547-T1
Valid prediction for GeneMark_model.107021_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9229, 9236
Sorry, prediction GeneMark_model.107018_t fails validation.
(ATG)	 GA	8199-8248	GT	AAG
(AAG)	 AG	8381-8435	GT	TGG
(GAG)	 AG	8857-8921	GT	AGG
(AGA)	 AG	9229-9236	GT	AGG
-recovered GeneMark_model.107018_t, initial, 8199, 8248
-recovered GeneMark_model.107018_t, internal, 8381, 8435
-recovered GeneMark_model.107018_t, internal, 8857, 8921
-recovered GeneMark_model.107018_t, internal, 9229, 9236
Valid prediction for snap_scaffold_234-snap.3-T1
Couldn't classify 373, 422
Sorry, prediction GeneMark_model.107024_t fails validation.
(GGA)	 AG	373-422	GT	GAG
(AGA)	 AG	442-508	GT	GAG
(AGA)	 AG	574-651	GC	ACG
(ACA)	 AG	674-781	GT	ATG
(AGA)	 AG	804-1037	GT	CCG
(GGA)	 AG	1331-1345	GT	GGG
(GGA)	 AG	1367-1444	GC	GCG
(AGG)	 AG	1469-1498	GT	GAG
(AGA)	 AG	1520-1528	GT	GAG
(AGA)	 AG	1571-1636	GT	GAG
(AGA)	 AG	1673-1678	GC	GCG
(AGA)	 AG	1703-1711	GT	GAG
(AAA)	 AG	2871-2897	GT	AGG
(GAG)	 AG	2923-2994	GT	AGG
(CAG)	 AG	3018-3053	GT	GGG
(GGA)	 AG	3097-3141	GT	AAG
(GAT)	 AG	3161-3292	GT	GAG
(GAA)	 AG	3321-3435	TT	AGT
-recovered GeneMark_model.107024_t, terminal, 3321, 3435
-recovered GeneMark_model.107024_t, internal, 373, 422
-recovered GeneMark_model.107024_t, internal, 442, 508
-recovered GeneMark_model.107024_t, internal, 574, 651
-recovered GeneMark_model.107024_t, internal, 674, 781
-recovered GeneMark_model.107024_t, internal, 804, 1037
-recovered GeneMark_model.107024_t, internal, 1331, 1345
-recovered GeneMark_model.107024_t, internal, 1367, 1444
-recovered GeneMark_model.107024_t, internal, 1469, 1498
-recovered GeneMark_model.107024_t, internal, 1520, 1528
-recovered GeneMark_model.107024_t, internal, 1571, 1636
-recovered GeneMark_model.107024_t, internal, 1673, 1678
-recovered GeneMark_model.107024_t, internal, 1703, 1711
-recovered GeneMark_model.107024_t, internal, 2871, 2897
-recovered GeneMark_model.107024_t, internal, 2923, 2994
-recovered GeneMark_model.107024_t, internal, 3018, 3053
-recovered GeneMark_model.107024_t, internal, 3097, 3141
-recovered GeneMark_model.107024_t, internal, 3161, 3292
Valid prediction for GeneMark_model.107020_t
Valid prediction for snap_scaffold_234-snap.1-T1
Valid prediction for GeneMark_model.107022_t
Valid prediction for snap_scaffold_234-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61548-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9281
-exon list size: 93


building trellis

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-found 4 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support