-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2339

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 311, 322
Couldn't classify 740, 777
Sorry, prediction GeneMark_model.110254_t fails validation.
(GAT)	 AG	311-322	GT	GGG
(GAG)	 AG	348-437	GT	AGG
(GGA)	 AG	473-481	GT	AGG
(GGA)	 AG	507-515	GT	AGG
(AGG)	 AG	596-616	GT	AGG
(GAA)	 AG	637-714	GT	AGG
(GAA)	 AG	740-777	GT	TTG
-recovered GeneMark_model.110254_t, internal, 311, 322
-recovered GeneMark_model.110254_t, internal, 348, 437
-recovered GeneMark_model.110254_t, internal, 473, 481
-recovered GeneMark_model.110254_t, internal, 507, 515
-recovered GeneMark_model.110254_t, internal, 596, 616
-recovered GeneMark_model.110254_t, internal, 637, 714
-recovered GeneMark_model.110254_t, internal, 740, 777

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1371
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support