-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2333

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1148, 1277
Sorry, prediction snap_scaffold_2333-snap.1-T1 fails validation.
(ATG)	 AC	136-223	GT	GGG
(GTA)	 AG	913-1065	GT	TGG
(CGT)	 AG	1148-1277	GT	GCG
-recovered snap_scaffold_2333-snap.1-T1, initial, 136, 223
-recovered snap_scaffold_2333-snap.1-T1, internal, 913, 1065
-recovered snap_scaffold_2333-snap.1-T1, internal, 1148, 1277
Valid prediction for Augustus_model.g42039.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110250_t
Couldn't classify 85, 212
Sorry, prediction GeneMark_model.110251_t fails validation.
(AGA)	 AG	85-212	GT	CCG
(GGC)	 AG	333-459	GT	GAG
(AGA)	 AG	603-636	TG	AAT
-recovered GeneMark_model.110251_t, terminal, 603, 636
-recovered GeneMark_model.110251_t, internal, 85, 212
-recovered GeneMark_model.110251_t, internal, 333, 459

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1375
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support