-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2331

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63074-T1
Valid prediction for snap_scaffold_2331-snap.1-T1
Couldn't classify 14, 56
Couldn't classify 799, 971
Sorry, prediction GeneMark_model.110249_t fails validation.
(TGA)	 AG	14-56	GT	AGG
(GTG)	 AG	302-478	GT	AGG
(ACC)	 AG	799-971	GT	GAG
-recovered GeneMark_model.110249_t, internal, 14, 56
-recovered GeneMark_model.110249_t, internal, 302, 478
-recovered GeneMark_model.110249_t, internal, 799, 971
Couldn't classify 799, 985
Sorry, prediction Augustus_model.g42038.t1 fails validation.
(ATG)	 AC	30-56	GT	AGG
(GTG)	 AG	302-478	GT	AGG
(ACC)	 AG	799-985	GT	GGG
-recovered Augustus_model.g42038.t1, initial, 30, 56
-recovered Augustus_model.g42038.t1, internal, 302, 478
-recovered Augustus_model.g42038.t1, internal, 799, 985

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1376
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support