-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2329

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 816, 870
Couldn't classify 1094, 1129
Sorry, prediction GeneMark_model.110248_t fails validation.
(GCC)	 AG	816-870	GT	GAG
(AGA)	 AG	892-906	GT	AGG
(GGA)	 AG	935-970	GT	GAG
(GAA)	 AG	994-1023	GT	GAG
(AGA)	 AG	1047-1070	GT	GAG
(GAA)	 AG	1094-1129	GT	GTG
-recovered GeneMark_model.110248_t, internal, 816, 870
-recovered GeneMark_model.110248_t, internal, 892, 906
-recovered GeneMark_model.110248_t, internal, 935, 970
-recovered GeneMark_model.110248_t, internal, 994, 1023
-recovered GeneMark_model.110248_t, internal, 1047, 1070
-recovered GeneMark_model.110248_t, internal, 1094, 1129

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1377
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support