-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2328

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 92, 184
Sorry, prediction GeneMark_model.110246_t fails validation.
(AGC)	 AG	92-184	GT	GAG
(ACA)	 AG	262-390	GT	GAG
(AGA)	 AG	420-600	CC	GAC
-recovered GeneMark_model.110246_t, terminal, 420, 600
-recovered GeneMark_model.110246_t, internal, 92, 184
-recovered GeneMark_model.110246_t, internal, 262, 390
Couldn't classify 1052, 1255
Sorry, prediction snap_scaffold_2328-snap.1-T1 fails validation.
(ACG)	 AG	1052-1255	GT	ATG
-recovered snap_scaffold_2328-snap.1-T1, internal, 1052, 1255

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 203, 358
Sorry, prediction Augustus_model.g42037.t1 fails validation.
(GCC)	 AG	203-358	GT	AGG
-recovered Augustus_model.g42037.t1, internal, 203, 358
Valid prediction for GlimmerHMM_glimmerT_63073-T1
Couldn't classify 88, 114
Sorry, prediction GeneMark_model.110247_t fails validation.
(GCT)	 AG	88-114	GT	CTG
(GCC)	 AG	203-358	GT	AGG
(ATC)	 AG	661-684	AC	AAA
-recovered GeneMark_model.110247_t, terminal, 661, 684
-recovered GeneMark_model.110247_t, internal, 88, 114
-recovered GeneMark_model.110247_t, internal, 203, 358

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1378
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support