-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2326

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 39, 75
Couldn't classify 800, 1051
Sorry, prediction GeneMark_model.110244_t fails validation.
(CCC)	 AG	39-75	GT	AGG
(GTA)	 AG	453-545	GT	AGG
(GCA)	 AG	800-1051	GT	TGG
-recovered GeneMark_model.110244_t, internal, 39, 75
-recovered GeneMark_model.110244_t, internal, 453, 545
-recovered GeneMark_model.110244_t, internal, 800, 1051
Couldn't classify 350, 545
Couldn't classify 800, 1051
Sorry, prediction snap_scaffold_2326-snap.1-T1 fails validation.
(CCA)	 AG	350-545	GT	AGG
(GCA)	 AG	800-1051	GT	TGG
-recovered snap_scaffold_2326-snap.1-T1, internal, 350, 545
-recovered snap_scaffold_2326-snap.1-T1, internal, 800, 1051
Couldn't classify 19, 75
Couldn't classify 800, 897
Sorry, prediction pasa_asmbl_31996.p1 fails validation.
(AGT)	 AG	19-75	GT	AGG
(CCA)	 AG	350-545	GT	AGG
(GCA)	 AG	800-897	CA	GCC
-recovered pasa_asmbl_31996.p1, internal, 19, 75
-recovered pasa_asmbl_31996.p1, internal, 350, 545
Couldn't classify 1, 75
Sorry, prediction Augustus_model.g42036.t1 fails validation.
(CCC)	 CT	1-75	GT	AGG
(CCA)	 AG	350-545	GT	AGG
(GCA)	 AG	800-1051	GT	TGG
(ACA)	 AG	1296-1345	CC	AAC
-recovered Augustus_model.g42036.t1, terminal, 1296, 1345
-recovered Augustus_model.g42036.t1, internal, 350, 545
-recovered Augustus_model.g42036.t1, internal, 800, 1051

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1379
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support