-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2324

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2324-snap.1-T1
Couldn't classify 37, 63
Sorry, prediction GeneMark_model.110242_t fails validation.
(GGG)	 AG	37-63	GT	AGG
(AGC)	 AG	213-248	GT	GAG
(GGG)	 AG	292-402	GT	CTG
(TGT)	 AG	437-473	CC	GAC
-recovered GeneMark_model.110242_t, terminal, 437, 473
-recovered GeneMark_model.110242_t, internal, 37, 63
-recovered GeneMark_model.110242_t, internal, 213, 248
-recovered GeneMark_model.110242_t, internal, 292, 402

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 187, 204
Sorry, prediction GeneMark_model.110243_t fails validation.
(ACA)	 AG	187-204	GT	GCG
(GGG)	 AG	297-323	GT	GGG
(AGA)	 AG	443-448	GT	AGG
(AGA)	 AG	471-488	GT	GAG
(AAA)	 AG	514-528	GT	GAG
(AGA)	 AG	703-850	GC	AGG
add_exon() Sorry, GeneMark_model.110243_t 471-488-terminal-1 is invalid.
-recovered GeneMark_model.110243_t, terminal, 471, 488
-recovered GeneMark_model.110243_t, terminal, 703, 850
-recovered GeneMark_model.110243_t, internal, 187, 204
-recovered GeneMark_model.110243_t, internal, 297, 323
-recovered GeneMark_model.110243_t, internal, 443, 448
-recovered GeneMark_model.110243_t, internal, 471, 488
-recovered GeneMark_model.110243_t, internal, 514, 528
-recovered GeneMark_model.110243_t, internal, 703, 850

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1380
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support