-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2320

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.110239_t
add_exon() Sorry, GeneMark_model.110239_t 58-107-initial-1 is invalid.
add_exon() Sorry, GeneMark_model.110239_t 395-612-internal-3 is invalid.
add_exon() Sorry, GeneMark_model.110239_t 675-701-internal-2 is invalid.
add_exon() Sorry, GeneMark_model.110239_t 1058-1172-terminal-2 is invalid.
Couldn't classify 395, 612
Sorry, prediction snap_scaffold_2320-snap.1-T1 fails validation.
(ATG)	 AG	58-107	GT	AGG
(GGC)	 AG	395-612	GT	AGG
add_exon() Sorry, snap_scaffold_2320-snap.1-T1 58-107-initial-1 is invalid.
-recovered snap_scaffold_2320-snap.1-T1, initial, 58, 107
-recovered snap_scaffold_2320-snap.1-T1, internal, 58, 107
-recovered snap_scaffold_2320-snap.1-T1, internal, 395, 612
Valid prediction for Augustus_model.g42035.t1
add_exon() Sorry, Augustus_model.g42035.t1 58-107-initial-1 is invalid.
add_exon() Sorry, Augustus_model.g42035.t1 395-616-terminal-3 is invalid.
Valid prediction for GlimmerHMM_glimmerT_63072-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1385
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support