-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2317

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 875, 1077
Sorry, prediction snap_scaffold_2317-snap.1-T1 fails validation.
(TAG)	 AG	875-1077	GT	GGG
-recovered snap_scaffold_2317-snap.1-T1, internal, 875, 1077

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63070-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63070-T1 382-541-terminal-1 is invalid.
Couldn't classify 238, 314
Couldn't classify 1339, 1374
Sorry, prediction GeneMark_model.110237_t fails validation.
(CTG)	 AG	238-314	GT	AAG
(GAA)	 AG	382-527	GT	CCG
(CAT)	 AG	989-1046	GT	ATG
(GTA)	 AG	1339-1374	GT	AGG
-recovered GeneMark_model.110237_t, internal, 238, 314
-recovered GeneMark_model.110237_t, internal, 382, 527
-recovered GeneMark_model.110237_t, internal, 989, 1046
-recovered GeneMark_model.110237_t, internal, 1339, 1374
Valid prediction for Augustus_model.g42034.t1
add_exon() Sorry, Augustus_model.g42034.t1 382-541-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1385
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support