-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2310

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.110229_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110228_t
Couldn't classify 246, 593
Sorry, prediction GlimmerHMM_glimmerT_63068-T1 fails validation.
(CAC)	 AG	246-593	GT	AAG
(GAC)	 AG	683-910	TG	GAT
-recovered GlimmerHMM_glimmerT_63068-T1, terminal, 683, 910
-recovered GlimmerHMM_glimmerT_63068-T1, internal, 246, 593
Couldn't classify 246, 563
Couldn't classify 1185, 1361
Sorry, prediction Augustus_model.g42031.t1 fails validation.
(CAC)	 AG	246-563	GT	AGG
(GAC)	 AG	683-886	GT	TGG
(GCT)	 AG	1185-1361	GT	AGG
-recovered Augustus_model.g42031.t1, internal, 246, 563
-recovered Augustus_model.g42031.t1, internal, 683, 886
-recovered Augustus_model.g42031.t1, internal, 1185, 1361
Couldn't classify 246, 593
Sorry, prediction GeneMark_model.110230_t fails validation.
(CAC)	 AG	246-593	GT	AAG
(GAC)	 AG	683-910	TG	GAT
-recovered GeneMark_model.110230_t, terminal, 683, 910
-recovered GeneMark_model.110230_t, internal, 246, 593
Couldn't classify 246, 563
Couldn't classify 1185, 1361
Sorry, prediction snap_scaffold_2310-snap.1-T1 fails validation.
(CAC)	 AG	246-563	GT	AGG
(GAC)	 AG	683-886	GT	TGG
(GCT)	 AG	1185-1361	GT	AGG
-recovered snap_scaffold_2310-snap.1-T1, internal, 246, 563
-recovered snap_scaffold_2310-snap.1-T1, internal, 683, 886
-recovered snap_scaffold_2310-snap.1-T1, internal, 1185, 1361

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1391
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support