-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2308

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 351, 383
Couldn't classify 620, 631
Sorry, prediction GeneMark_model.110227_t fails validation.
(GGA)	 AG	351-383	GT	GGG
(AGA)	 AG	405-419	GT	GGG
(AGG)	 AG	450-497	GT	GAG
(AGA)	 AG	531-560	GT	GAG
(GGA)	 AG	620-631	GT	GGG
-recovered GeneMark_model.110227_t, internal, 351, 383
-recovered GeneMark_model.110227_t, internal, 405, 419
-recovered GeneMark_model.110227_t, internal, 450, 497
-recovered GeneMark_model.110227_t, internal, 531, 560
-recovered GeneMark_model.110227_t, internal, 620, 631

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1392
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support