-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2306

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 460, 509
Couldn't classify 545, 698
Sorry, prediction snap_scaffold_2306-snap.1-T1 fails validation.
(TGA)	 AG	460-509	GT	ACG
(CTG)	 AG	545-698	GT	AGG
-recovered snap_scaffold_2306-snap.1-T1, internal, 460, 509
-recovered snap_scaffold_2306-snap.1-T1, internal, 545, 698
Valid prediction for GlimmerHMM_glimmerT_63067-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63067-T1 460-664-terminal-1 is invalid.
Couldn't classify 158, 244
Couldn't classify 1302, 1383
Sorry, prediction GeneMark_model.110226_t fails validation.
(AAA)	 AG	158-244	GT	AAG
(GGT)	 AG	324-332	GT	GAG
(TGA)	 AG	460-594	GT	CCG
(ACA)	 AG	1302-1383	GT	AGG
-recovered GeneMark_model.110226_t, internal, 158, 244
-recovered GeneMark_model.110226_t, internal, 324, 332
-recovered GeneMark_model.110226_t, internal, 460, 594
-recovered GeneMark_model.110226_t, internal, 1302, 1383

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1394
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support