-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2305

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 250, 404
Couldn't classify 935, 1038
Sorry, prediction GeneMark_model.110225_t fails validation.
(GAG)	 AG	250-404	GT	ATG
(GCC)	 AG	756-846	GT	AGG
(CCT)	 AG	935-1038	GT	AAG
-recovered GeneMark_model.110225_t, internal, 250, 404
-recovered GeneMark_model.110225_t, internal, 756, 846
-recovered GeneMark_model.110225_t, internal, 935, 1038
Couldn't classify 250, 404
Sorry, prediction Augustus_model.g42030.t1 fails validation.
(GAG)	 AG	250-404	GT	ATG
(GCC)	 AG	756-846	GT	AGG
(CCT)	 AG	935-1066	TA	GAT
-recovered Augustus_model.g42030.t1, terminal, 935, 1066
-recovered Augustus_model.g42030.t1, internal, 250, 404
-recovered Augustus_model.g42030.t1, internal, 756, 846
Couldn't classify 256, 404
Couldn't classify 935, 1033
Sorry, prediction pasa_asmbl_31988.p1 fails validation.
(GAG)	 GC	256-404	GT	ATG
(GCC)	 AG	756-846	GT	AGG
(CCT)	 AG	935-1033	GG	CAG
-recovered pasa_asmbl_31988.p1, internal, 756, 846
Couldn't classify 250, 404
Couldn't classify 935, 1038
Sorry, prediction snap_scaffold_2305-snap.1-T1 fails validation.
(GAG)	 AG	250-404	GT	ATG
(GCC)	 AG	756-846	GT	AGG
(CCT)	 AG	935-1038	GT	AAG
-recovered snap_scaffold_2305-snap.1-T1, internal, 250, 404
-recovered snap_scaffold_2305-snap.1-T1, internal, 756, 846
-recovered snap_scaffold_2305-snap.1-T1, internal, 935, 1038
Valid prediction for GlimmerHMM_glimmerT_63066-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1394
-exon list size: 8


building trellis

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20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support