-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2304

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 226, 519
Sorry, prediction Augustus_model.g42029.t1 fails validation.
(ACC)	 AG	226-519	GT	AGG
(TCT)	 AG	623-627	AT	GAA
-recovered Augustus_model.g42029.t1, terminal, 623, 627
-recovered Augustus_model.g42029.t1, internal, 226, 519
Valid prediction for GlimmerHMM_glimmerT_63065-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63065-T1 115-740-terminal-1 is invalid.
Couldn't classify 226, 519
Sorry, prediction GeneMark_model.110224_t fails validation.
(ACC)	 AG	226-519	GT	AGG
(TCC)	 AG	575-593	GT	GTG
(ACG)	 AG	987-1004	GT	AGG
(GGA)	 AG	1175-1217	CA	AGC
-recovered GeneMark_model.110224_t, terminal, 1175, 1217
-recovered GeneMark_model.110224_t, internal, 226, 519
-recovered GeneMark_model.110224_t, internal, 575, 593
-recovered GeneMark_model.110224_t, internal, 987, 1004

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2304-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1394
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support