-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2300

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1316, 1370
Sorry, prediction snap_scaffold_2300-snap.1-T1 fails validation.
(ATG)	 AT	188-257	GT	AGG
(ATG)	 AG	347-368	GT	AGG
(TAA)	 AG	1155-1214	GT	ATG
(GTG)	 AG	1316-1370	GT	AGG
-recovered snap_scaffold_2300-snap.1-T1, initial, 188, 257
add_exon() Sorry, snap_scaffold_2300-snap.1-T1 347-368-initial-1 is invalid.
-recovered snap_scaffold_2300-snap.1-T1, initial, 347, 368
-recovered snap_scaffold_2300-snap.1-T1, internal, 347, 368
-recovered snap_scaffold_2300-snap.1-T1, internal, 1155, 1214
-recovered snap_scaffold_2300-snap.1-T1, internal, 1316, 1370

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 277, 495
Couldn't classify 1078, 1125
Sorry, prediction GeneMark_model.110220_t fails validation.
(GAG)	 AG	277-495	GC	AGG
(AGA)	 AG	1078-1125	GT	CGG
-recovered GeneMark_model.110220_t, internal, 277, 495
-recovered GeneMark_model.110220_t, internal, 1078, 1125

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1370, rend_intergenic: 879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1399
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1370, rend_intergenic: 879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support