-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_23/scaffold_23_857165-1057624

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.89772_t
Valid prediction for Augustus_model.g34669.t1
Valid prediction for GeneMark_model.89768_t
Valid prediction for Augustus_model.g34663.t1
Valid prediction for GeneMark_model.89782_t
Valid prediction for snap_scaffold_23-snap.132-T1
Valid prediction for GeneMark_model.89780_t
Valid prediction for GlimmerHMM_glimmerT_51602-T1
Valid prediction for GeneMark_model.89754_t
Couldn't classify 149047, 149538
Sorry, prediction pasa_asmbl_30609.p1 fails validation.
(CCA)	 CT	149047-149538	TG	TGT
Valid prediction for Augustus_model.g34660.t1
Valid prediction for GeneMark_model.89761_t
Valid prediction for GeneMark_model.89771_t
Couldn't classify 97683, 97858
Couldn't classify 100084, 100204
Sorry, prediction pasa_asmbl_31245.p1 fails validation.
(GCG)	 TA	97683-97858	GT	AAG
(AGG)	 AG	100084-100204	GG	AAG
Valid prediction for GeneMark_model.89776_t
Valid prediction for snap_scaffold_23-snap.135-T1
Valid prediction for snap_scaffold_23-snap.137-T1
Valid prediction for Augustus_model.g34668.t1
Valid prediction for GlimmerHMM_glimmerT_51609-T1
Valid prediction for Augustus_model.g34672.t1
Valid prediction for GlimmerHMM_glimmerT_51619-T1
Valid prediction for GeneMark_model.89760_t
Valid prediction for GeneMark_model.89783_t
Valid prediction for Augustus_model.g34646.t1
Valid prediction for GlimmerHMM_glimmerT_51629-T1
Valid prediction for snap_scaffold_23-snap.151-T1
Valid prediction for GlimmerHMM_glimmerT_51624-T1
Valid prediction for GlimmerHMM_glimmerT_51614-T1
Valid prediction for Augustus_model.g34662.t1
Valid prediction for GlimmerHMM_glimmerT_51618-T1
Valid prediction for snap_scaffold_23-snap.139-T1
Valid prediction for Augustus_model.g34651.t1
Valid prediction for snap_scaffold_23-snap.142-T1
Valid prediction for GeneMark_model.89765_t
Valid prediction for GlimmerHMM_glimmerT_51622-T1
Valid prediction for Augustus_model.g34664.t1
Valid prediction for GeneMark_model.89757_t
Valid prediction for GlimmerHMM_glimmerT_51613-T1
Valid prediction for Augustus_model.g34647.t1
Valid prediction for Augustus_model.g34655.t1
Valid prediction for GlimmerHMM_glimmerT_51606-T1
Valid prediction for snap_scaffold_23-snap.128-T1
Valid prediction for GlimmerHMM_glimmerT_51616-T1
Valid prediction for GlimmerHMM_glimmerT_51605-T1
Valid prediction for GlimmerHMM_glimmerT_51630-T1
Valid prediction for GeneMark_model.89758_t
Valid prediction for GlimmerHMM_glimmerT_51615-T1
Valid prediction for Augustus_model.g34658.t1
Valid prediction for snap_scaffold_23-snap.141-T1
Valid prediction for GeneMark_model.89769_t
Valid prediction for GeneMark_model.89775_t
Valid prediction for GlimmerHMM_glimmerT_51626-T1
Valid prediction for snap_scaffold_23-snap.130-T1
Valid prediction for snap_scaffold_23-snap.122-T1
Valid prediction for Augustus_model.g34659.t1
Valid prediction for GlimmerHMM_glimmerT_51623-T1
Valid prediction for snap_scaffold_23-snap.138-T1
Valid prediction for GeneMark_model.89764_t
Valid prediction for snap_scaffold_23-snap.131-T1
Valid prediction for GeneMark_model.89767_t
Valid prediction for GeneMark_model.89774_t
Valid prediction for Augustus_model.g34653.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_35476-T1
Valid prediction for pasa_asmbl_31339.p1
Valid prediction for GlimmerHMM_glimmerT_51628-T1
Valid prediction for snap_scaffold_23-snap.124-T1
Valid prediction for GeneMark_model.89777_t
Valid prediction for GlimmerHMM_glimmerT_51608-T1
Valid prediction for snap_scaffold_23-snap.152-T1
Valid prediction for snap_scaffold_23-snap.121-T1
Valid prediction for snap_scaffold_23-snap.146-T1
Valid prediction for snap_scaffold_23-snap.133-T1
Valid prediction for HiQ_model.g34665.t1
Valid prediction for snap_scaffold_23-snap.134-T1
Valid prediction for GlimmerHMM_glimmerT_51621-T1
Valid prediction for snap_scaffold_23-snap.149-T1
Valid prediction for GlimmerHMM_glimmerT_51610-T1
Couldn't classify 17745, 17902
Couldn't classify 18595, 18618
Sorry, prediction pasa_asmbl_31987.p1 fails validation.
(GAT)	 AG	17745-17902	GT	CAG
(GAG)	 AG	18350-18494	GT	AGG
(GAA)	 AG	18595-18618	GC	AGG
-recovered pasa_asmbl_31987.p1, internal, 17745, 17902
-recovered pasa_asmbl_31987.p1, internal, 18350, 18494
-recovered pasa_asmbl_31987.p1, internal, 18595, 18618
Valid prediction for snap_scaffold_23-snap.145-T1
Valid prediction for GeneMark_model.89781_t
Valid prediction for snap_scaffold_23-snap.147-T1
Valid prediction for Augustus_model.g34657.t1
Valid prediction for GlimmerHMM_glimmerT_51612-T1
Valid prediction for snap_scaffold_23-snap.143-T1
Valid prediction for Augustus_model.g34666.t1
Valid prediction for GeneMark_model.89762_t
Valid prediction for snap_scaffold_23-snap.148-T1
Valid prediction for GeneMark_model.89773_t
Valid prediction for GeneMark_model.89778_t
Valid prediction for GeneMark_model.89759_t
Valid prediction for GeneMark_model.89770_t
Valid prediction for GeneMark_model.89755_t
Valid prediction for GlimmerHMM_glimmerT_51620-T1
Valid prediction for Augustus_model.g34652.t1
Valid prediction for snap_scaffold_23-snap.153-T1
Valid prediction for snap_scaffold_23-snap.150-T1
Valid prediction for GlimmerHMM_glimmerT_51604-T1
Valid prediction for GlimmerHMM_glimmerT_51601-T1
Valid prediction for snap_scaffold_23-snap.129-T1
Valid prediction for GlimmerHMM_glimmerT_51607-T1
Valid prediction for GlimmerHMM_glimmerT_51617-T1
Valid prediction for GlimmerHMM_glimmerT_51611-T1
Valid prediction for GlimmerHMM_glimmerT_51627-T1
Valid prediction for HiQ_model.g34661.t1
Valid prediction for Augustus_model.g34650.t1
Valid prediction for snap_scaffold_23-snap.144-T1
Valid prediction for snap_scaffold_23-snap.123-T1
Valid prediction for Augustus_model.g34670.t1
Valid prediction for GlimmerHMM_glimmerT_51625-T1
Valid prediction for snap_scaffold_23-snap.127-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_51603-T1
Couldn't classify 43526, 44362
Couldn't classify 44508, 44738
Sorry, prediction pasa_asmbl_31338.p1 fails validation.
(GGT)	 CA	43526-44362	GT	AGG
(GGC)	 AG	44508-44738	AC	TGA
Valid prediction for Augustus_model.g34654.t1
Valid prediction for Augustus_model.g34648.t1
Valid prediction for GeneMark_model.89763_t
Valid prediction for Augustus_model.g34667.t1
Valid prediction for Augustus_model.g34656.t1
Valid prediction for snap_scaffold_23-snap.126-T1
Valid prediction for Augustus_model.g34649.t1
Valid prediction for Augustus_model.g34671.t1
Valid prediction for snap_scaffold_23-snap.136-T1
Valid prediction for snap_scaffold_23-snap.125-T1
Valid prediction for snap_scaffold_23-snap.140-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 197402, rend_intergenic: 196518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 200460
-exon list size: 340


building trellis

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-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 197402, rend_intergenic: 196518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 34 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12647
-exon list size: 8


building trellis

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80.0    
90.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support