-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_23/scaffold_23_8515000-8700036

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.91469_t
Valid prediction for GeneMark_model.91484_t
Valid prediction for snap_scaffold_23-snap.1654-T1
Valid prediction for GeneMark_model.91445_t
Valid prediction for GeneMark_model.91456_t
Valid prediction for GlimmerHMM_glimmerT_52734-T1
Valid prediction for GeneMark_model.91461_t
Valid prediction for GeneMark_model.91476_t
Valid prediction for GeneMark_model.91452_t
Valid prediction for snap_scaffold_23-snap.1640-T1
Valid prediction for Augustus_model.g35461.t1
Valid prediction for snap_scaffold_23-snap.1666-T1
Valid prediction for Augustus_model.g35458.t1
Valid prediction for GlimmerHMM_glimmerT_52747-T1
Valid prediction for Augustus_model.g35459.t1
Valid prediction for GeneMark_model.91474_t
Valid prediction for GlimmerHMM_glimmerT_52736-T1
Valid prediction for GlimmerHMM_glimmerT_52749-T1
Valid prediction for GlimmerHMM_glimmerT_52741-T1
Valid prediction for Augustus_model.g35464.t1
Valid prediction for Augustus_model.g35457.t1
Valid prediction for Augustus_model.g35463.t1
Valid prediction for GeneMark_model.91490_t
Valid prediction for snap_scaffold_23-snap.1645-T1
Valid prediction for GeneMark_model.91460_t
Valid prediction for GlimmerHMM_glimmerT_52751-T1
Valid prediction for GlimmerHMM_glimmerT_52753-T1
Valid prediction for snap_scaffold_23-snap.1644-T1
Valid prediction for GeneMark_model.91443_t
Valid prediction for Augustus_model.g35468.t1
Valid prediction for GlimmerHMM_glimmerT_52744-T1
Valid prediction for Augustus_model.g35466.t1
Valid prediction for snap_scaffold_23-snap.1631-T1
Valid prediction for snap_scaffold_23-snap.1657-T1
Valid prediction for snap_scaffold_23-snap.1649-T1
Valid prediction for Augustus_model.g35467.t1
Valid prediction for GeneMark_model.91472_t
Valid prediction for snap_scaffold_23-snap.1661-T1
Valid prediction for GeneMark_model.91450_t
Valid prediction for GeneMark_model.91441_t
Valid prediction for GeneMark_model.91447_t
Valid prediction for GeneMark_model.91478_t
Valid prediction for GeneMark_model.91486_t
Valid prediction for GeneMark_model.91440_t
Valid prediction for GlimmerHMM_glimmerT_52759-T1
Valid prediction for GeneMark_model.91467_t
Valid prediction for GeneMark_model.91487_t
Valid prediction for GeneMark_model.91481_t
Valid prediction for snap_scaffold_23-snap.1638-T1
Valid prediction for GlimmerHMM_glimmerT_52754-T1
Valid prediction for GeneMark_model.91470_t
Valid prediction for GlimmerHMM_glimmerT_52743-T1
Valid prediction for GlimmerHMM_glimmerT_52760-T1
Valid prediction for GeneMark_model.91451_t
Valid prediction for GeneMark_model.91458_t
Valid prediction for GeneMark_model.91449_t
Valid prediction for GlimmerHMM_glimmerT_52750-T1
Valid prediction for snap_scaffold_23-snap.1656-T1
Valid prediction for GlimmerHMM_glimmerT_52738-T1
Valid prediction for snap_scaffold_23-snap.1642-T1
Valid prediction for snap_scaffold_23-snap.1636-T1
Valid prediction for snap_scaffold_23-snap.1659-T1
Valid prediction for GlimmerHMM_glimmerT_52752-T1
Valid prediction for snap_scaffold_23-snap.1655-T1
Valid prediction for snap_scaffold_23-snap.1662-T1
Valid prediction for snap_scaffold_23-snap.1667-T1
Valid prediction for GlimmerHMM_glimmerT_52735-T1
Valid prediction for snap_scaffold_23-snap.1668-T1
Valid prediction for GeneMark_model.91492_t
Valid prediction for Augustus_model.g35460.t1
Valid prediction for GeneMark_model.91479_t
Valid prediction for GeneMark_model.91465_t
Valid prediction for GeneMark_model.91454_t
Valid prediction for snap_scaffold_23-snap.1651-T1
Valid prediction for snap_scaffold_23-snap.1646-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.91442_t
Valid prediction for Augustus_model.g35465.t1
Valid prediction for GlimmerHMM_glimmerT_52746-T1
Valid prediction for GeneMark_model.91464_t
Valid prediction for GeneMark_model.91489_t
Valid prediction for GeneMark_model.91448_t
Valid prediction for GlimmerHMM_glimmerT_52737-T1
Valid prediction for Augustus_model.g35469.t1
Valid prediction for GlimmerHMM_glimmerT_52758-T1
Valid prediction for GlimmerHMM_glimmerT_52745-T1
Valid prediction for GlimmerHMM_glimmerT_52742-T1
Valid prediction for snap_scaffold_23-snap.1650-T1
Valid prediction for GeneMark_model.91477_t
Valid prediction for snap_scaffold_23-snap.1639-T1
Valid prediction for snap_scaffold_23-snap.1664-T1
Valid prediction for GlimmerHMM_glimmerT_52755-T1
Valid prediction for snap_scaffold_23-snap.1632-T1
Valid prediction for snap_scaffold_23-snap.1652-T1
Valid prediction for GeneMark_model.91485_t
Valid prediction for snap_scaffold_23-snap.1660-T1
Valid prediction for snap_scaffold_23-snap.1647-T1
Valid prediction for Augustus_model.g35462.t1
Valid prediction for GeneMark_model.91475_t
Valid prediction for GeneMark_model.91471_t
Valid prediction for GeneMark_model.91446_t
Valid prediction for GlimmerHMM_glimmerT_52757-T1
Valid prediction for GeneMark_model.91453_t
Valid prediction for GlimmerHMM_glimmerT_52740-T1
Valid prediction for GeneMark_model.91444_t
Valid prediction for snap_scaffold_23-snap.1641-T1
Valid prediction for GeneMark_model.91463_t
Valid prediction for snap_scaffold_23-snap.1665-T1
Valid prediction for GeneMark_model.91488_t
Valid prediction for GeneMark_model.91462_t
Valid prediction for GeneMark_model.91468_t
Valid prediction for GlimmerHMM_glimmerT_52756-T1
Valid prediction for snap_scaffold_23-snap.1637-T1
Valid prediction for snap_scaffold_23-snap.1658-T1
Valid prediction for GeneMark_model.91483_t
Valid prediction for snap_scaffold_23-snap.1663-T1
Valid prediction for snap_scaffold_23-snap.1635-T1
Valid prediction for GeneMark_model.91480_t
Valid prediction for snap_scaffold_23-snap.1634-T1
Valid prediction for snap_scaffold_23-snap.1633-T1
Valid prediction for snap_scaffold_23-snap.1630-T1
Valid prediction for GeneMark_model.91482_t
Valid prediction for GeneMark_model.91457_t
Valid prediction for GeneMark_model.91466_t
Valid prediction for snap_scaffold_23-snap.1648-T1
Valid prediction for GlimmerHMM_glimmerT_52748-T1
Valid prediction for GeneMark_model.91455_t
Valid prediction for snap_scaffold_23-snap.1643-T1
Valid prediction for snap_scaffold_23-snap.1653-T1
Valid prediction for GlimmerHMM_glimmerT_52739-T1
Valid prediction for GeneMark_model.91473_t
Valid prediction for GeneMark_model.91459_t
Valid prediction for GeneMark_model.91491_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10923, rend_intergenic: 10225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32502, rend_intergenic: 23788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43942, rend_intergenic: 41042  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45920, rend_intergenic: 44202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48124, rend_intergenic: 45973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50406, rend_intergenic: 48382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52026, rend_intergenic: 51847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53542, rend_intergenic: 52302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61547, rend_intergenic: 61251  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81216, rend_intergenic: 79207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86815, rend_intergenic: 82470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93558, rend_intergenic: 88946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121950, rend_intergenic: 120313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127746, rend_intergenic: 126500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 185037
-exon list size: 636


building trellis

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99.8    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 10923, rend_intergenic: 10225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32502, rend_intergenic: 23788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43942, rend_intergenic: 41042  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45920, rend_intergenic: 44202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48124, rend_intergenic: 45973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50406, rend_intergenic: 48382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52026, rend_intergenic: 51847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53542, rend_intergenic: 52302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61547, rend_intergenic: 61251  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81216, rend_intergenic: 79207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86815, rend_intergenic: 82470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93558, rend_intergenic: 88946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121950, rend_intergenic: 120313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127746, rend_intergenic: 126500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support