-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_23/scaffold_23_6486807-6720153

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.90897_t
Valid prediction for CodingQuarry_transcript_35628-T1
Valid prediction for GlimmerHMM_glimmerT_52430-T1
Couldn't classify 118209, 118360
Sorry, prediction pasa_asmbl_30919.p1 fails validation.
(ATG)	 TC	117307-117493	GT	GGG
(CGG)	 AG	118209-118360	CT	ACC
-recovered pasa_asmbl_30919.p1, initial, 117307, 117493
Valid prediction for GeneMark_model.90837_t
Valid prediction for snap_scaffold_23-snap.1185-T1
Valid prediction for snap_scaffold_23-snap.1178-T1
Valid prediction for snap_scaffold_23-snap.1213-T1
Valid prediction for GeneMark_model.90901_t
Couldn't classify 185018, 185089
Couldn't classify 190406, 190769
Sorry, prediction pasa_asmbl_30938.p1 fails validation.
(AGG)	 CC	185018-185089	GT	AGG
(TCC)	 AG	186580-186679	GT	GTG
(ACA)	 AG	187619-187740	GT	GGG
(GAG)	 AG	188807-188980	GT	AGG
(GTG)	 AG	189229-189411	GT	AGG
(GAC)	 AG	189666-189768	GT	AAG
(ACG)	 AG	189976-190159	GT	AGG
(ACA)	 AG	190406-190769	GC	GGG
add_exon() Sorry, pasa_asmbl_30938.p1 189666-189768-terminal-3 is invalid.
-recovered pasa_asmbl_30938.p1, terminal, 189666, 189768
-recovered pasa_asmbl_30938.p1, internal, 186580, 186679
-recovered pasa_asmbl_30938.p1, internal, 187619, 187740
-recovered pasa_asmbl_30938.p1, internal, 188807, 188980
-recovered pasa_asmbl_30938.p1, internal, 189229, 189411
-recovered pasa_asmbl_30938.p1, internal, 189666, 189768
-recovered pasa_asmbl_30938.p1, internal, 189976, 190159
-recovered pasa_asmbl_30938.p1, internal, 190406, 190769
Valid prediction for snap_scaffold_23-snap.1192-T1
Valid prediction for GlimmerHMM_glimmerT_52431-T1
Valid prediction for GeneMark_model.90860_t
Valid prediction for GlimmerHMM_glimmerT_52414-T1
Valid prediction for GlimmerHMM_glimmerT_52432-T1
Valid prediction for Augustus_model.g35257.t1
Valid prediction for snap_scaffold_23-snap.1201-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g35255.t1
Valid prediction for snap_scaffold_23-snap.1216-T1
Valid prediction for GlimmerHMM_glimmerT_52420-T1
Valid prediction for GeneMark_model.90836_t
Valid prediction for GlimmerHMM_glimmerT_52425-T1
Valid prediction for GeneMark_model.90848_t
Valid prediction for GlimmerHMM_glimmerT_52435-T1
Valid prediction for snap_scaffold_23-snap.1187-T1
Valid prediction for Augustus_model.g35261.t1
Valid prediction for pasa_asmbl_30925.p1
Valid prediction for GeneMark_model.90853_t
Valid prediction for snap_scaffold_23-snap.1173-T1
Valid prediction for HiQ_model.g35260.t1
Valid prediction for snap_scaffold_23-snap.1197-T1
Valid prediction for snap_scaffold_23-snap.1182-T1
Valid prediction for GlimmerHMM_glimmerT_52415-T1
Valid prediction for Augustus_model.g35249.t1
Valid prediction for GlimmerHMM_glimmerT_52409-T1
Valid prediction for snap_scaffold_23-snap.1189-T1
Valid prediction for GeneMark_model.90832_t
Valid prediction for GeneMark_model.90855_t
Valid prediction for GeneMark_model.90845_t
Valid prediction for GeneMark_model.90880_t
Valid prediction for GeneMark_model.90847_t
Valid prediction for GlimmerHMM_glimmerT_52419-T1
Valid prediction for GeneMark_model.90861_t
Valid prediction for GeneMark_model.90843_t
Valid prediction for snap_scaffold_23-snap.1205-T1
Valid prediction for GlimmerHMM_glimmerT_52412-T1
Valid prediction for snap_scaffold_23-snap.1169-T1
Valid prediction for Augustus_model.g35248.t1
Valid prediction for snap_scaffold_23-snap.1217-T1
Valid prediction for snap_scaffold_23-snap.1211-T1
Valid prediction for GeneMark_model.90884_t
Valid prediction for Augustus_model.g35256.t1
Valid prediction for Augustus_model.g35251.t1
Valid prediction for GeneMark_model.90871_t
Valid prediction for GeneMark_model.90878_t
Valid prediction for GeneMark_model.90874_t
Valid prediction for Augustus_model.g35246.t1
Valid prediction for snap_scaffold_23-snap.1193-T1
Valid prediction for GlimmerHMM_glimmerT_52410-T1
Valid prediction for GeneMark_model.90840_t
Valid prediction for Augustus_model.g35250.t1
Valid prediction for GeneMark_model.90899_t
Valid prediction for snap_scaffold_23-snap.1195-T1
Valid prediction for GeneMark_model.90875_t
Valid prediction for GeneMark_model.90891_t
Valid prediction for snap_scaffold_23-snap.1194-T1
Valid prediction for CodingQuarry_transcript_35623-T1
Couldn't classify 204378, 204560
Sorry, prediction CodingQuarry_transcript_35629-T1 fails validation.
(ATG)	 GT	203508-203538	GT	AGG
(GGA)	 AG	203959-204113	GT	GCG
(TCG)	 TG	204378-204560	GT	AGG
(ACC)	 AG	204739-204917	GT	AAG
(GAT)	 AG	205017-205147	GT	AGG
(AGG)	 AG	205246-205354	GT	AGG
(GAG)	 AG	205488-205601	GT	AGG
(GGG)	 AG	206491-206562	GT	AGG
(AGG)	 AG	206674-206791	GT	AGG
(GTG)	 AG	207175-207306	AC	GAA
-recovered CodingQuarry_transcript_35629-T1, initial, 203508, 203538
-recovered CodingQuarry_transcript_35629-T1, terminal, 207175, 207306
-recovered CodingQuarry_transcript_35629-T1, internal, 203959, 204113
-recovered CodingQuarry_transcript_35629-T1, internal, 204739, 204917
-recovered CodingQuarry_transcript_35629-T1, internal, 205017, 205147
-recovered CodingQuarry_transcript_35629-T1, internal, 205246, 205354
-recovered CodingQuarry_transcript_35629-T1, internal, 205488, 205601
-recovered CodingQuarry_transcript_35629-T1, internal, 206491, 206562
-recovered CodingQuarry_transcript_35629-T1, internal, 206674, 206791
Couldn't classify 191640, 191885
Sorry, prediction pasa_asmbl_30940.p1 fails validation.
(ATC)	 GC	191640-191885	GT	AGG
(GAT)	 AG	194277-194333	GT	AAG
(GTG)	 AG	196347-196532	GT	AGG
(ATG)	 AG	197185-197277	GT	ACG
(GGG)	 AG	197398-197472	GT	AGG
(GCG)	 AG	197600-197707	AG	AGA
-recovered pasa_asmbl_30940.p1, initial, 197185, 197277
-recovered pasa_asmbl_30940.p1, terminal, 197600, 197707
-recovered pasa_asmbl_30940.p1, internal, 194277, 194333
-recovered pasa_asmbl_30940.p1, internal, 196347, 196532
-recovered pasa_asmbl_30940.p1, internal, 197185, 197277
-recovered pasa_asmbl_30940.p1, internal, 197398, 197472
Valid prediction for GeneMark_model.90863_t
Valid prediction for GlimmerHMM_glimmerT_52421-T1
Valid prediction for snap_scaffold_23-snap.1196-T1
Valid prediction for GeneMark_model.90833_t
Valid prediction for GeneMark_model.90886_t
Valid prediction for CodingQuarry_transcript_35625-T1
Valid prediction for snap_scaffold_23-snap.1198-T1
Valid prediction for GlimmerHMM_glimmerT_52424-T1
Valid prediction for GeneMark_model.90831_t
Valid prediction for Augustus_model.g35254.t1
Valid prediction for snap_scaffold_23-snap.1174-T1
Valid prediction for GlimmerHMM_glimmerT_52411-T1
Valid prediction for GlimmerHMM_glimmerT_52413-T1
Valid prediction for Augustus_model.g35262.t1
Valid prediction for GlimmerHMM_glimmerT_52416-T1
Valid prediction for snap_scaffold_23-snap.1179-T1
Valid prediction for GeneMark_model.90896_t
Valid prediction for snap_scaffold_23-snap.1176-T1
Valid prediction for GeneMark_model.90893_t
Valid prediction for GeneMark_model.90882_t
Valid prediction for CodingQuarry_transcript_35624-T1
Valid prediction for pasa_asmbl_30922.p1
Valid prediction for GlimmerHMM_glimmerT_52427-T1
Valid prediction for GeneMark_model.90849_t
Valid prediction for GeneMark_model.90850_t
Valid prediction for GlimmerHMM_glimmerT_52418-T1
Valid prediction for Augustus_model.g35265.t1
Valid prediction for GeneMark_model.90868_t
Valid prediction for CodingQuarry_transcript_35627-T1
Valid prediction for GeneMark_model.90869_t
Valid prediction for GeneMark_model.90839_t
Couldn't classify 170965, 170980
Couldn't classify 178391, 178483
Sorry, prediction pasa_asmbl_30937.p1 fails validation.
(GAC)	 TG	170965-170980	GT	CAG
(GCA)	 AG	173508-173586	GT	AAG
(GCT)	 AG	173910-173999	GT	AGG
(GTT)	 AG	174798-174854	GT	AAG
(AAG)	 AG	177068-177131	GT	TGG
(CCT)	 AG	177343-177417	GT	GGG
(ATG)	 AG	178391-178483	CA	TGC
-recovered pasa_asmbl_30937.p1, internal, 173508, 173586
-recovered pasa_asmbl_30937.p1, internal, 173910, 173999
-recovered pasa_asmbl_30937.p1, internal, 174798, 174854
-recovered pasa_asmbl_30937.p1, internal, 177068, 177131
-recovered pasa_asmbl_30937.p1, internal, 177343, 177417
Valid prediction for Augustus_model.g35263.t1
Valid prediction for GeneMark_model.90876_t
Valid prediction for GlimmerHMM_glimmerT_52404-T1
Valid prediction for GeneMark_model.90842_t
Valid prediction for GeneMark_model.90856_t
Valid prediction for GeneMark_model.90889_t
Valid prediction for snap_scaffold_23-snap.1175-T1
Valid prediction for pasa_asmbl_30928.p1
Valid prediction for GeneMark_model.90906_t
Valid prediction for HiQ_model.g35258.t1
Valid prediction for snap_scaffold_23-snap.1207-T1
Valid prediction for Augustus_model.g35247.t1
Valid prediction for snap_scaffold_23-snap.1200-T1
Valid prediction for Augustus_model.g35252.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_23-snap.1188-T1
Valid prediction for GeneMark_model.90857_t
Valid prediction for Augustus_model.g35243.t1
Valid prediction for snap_scaffold_23-snap.1170-T1
Valid prediction for GeneMark_model.90846_t
Valid prediction for snap_scaffold_23-snap.1202-T1
Valid prediction for snap_scaffold_23-snap.1172-T1
Valid prediction for GeneMark_model.90872_t
Valid prediction for GlimmerHMM_glimmerT_52417-T1
Valid prediction for snap_scaffold_23-snap.1214-T1
Valid prediction for GeneMark_model.90881_t
Valid prediction for GlimmerHMM_glimmerT_52422-T1
Valid prediction for Augustus_model.g35244.t1
Valid prediction for GeneMark_model.90902_t
Valid prediction for snap_scaffold_23-snap.1204-T1
Valid prediction for snap_scaffold_23-snap.1209-T1
Valid prediction for snap_scaffold_23-snap.1208-T1
Valid prediction for pasa_asmbl_31700.p1
Valid prediction for GlimmerHMM_glimmerT_52407-T1
Valid prediction for GlimmerHMM_glimmerT_52426-T1
Valid prediction for snap_scaffold_23-snap.1183-T1
Valid prediction for snap_scaffold_23-snap.1215-T1
Valid prediction for snap_scaffold_23-snap.1212-T1
Valid prediction for snap_scaffold_23-snap.1206-T1
Valid prediction for GeneMark_model.90903_t
Valid prediction for GeneMark_model.90834_t
Valid prediction for GeneMark_model.90890_t
Valid prediction for GeneMark_model.90864_t
Valid prediction for GlimmerHMM_glimmerT_52405-T1
Valid prediction for GeneMark_model.90887_t
Valid prediction for GeneMark_model.90859_t
Valid prediction for Augustus_model.g35245.t1
Valid prediction for GeneMark_model.90862_t
Valid prediction for GlimmerHMM_glimmerT_52433-T1
Valid prediction for GlimmerHMM_glimmerT_52434-T1
Valid prediction for Augustus_model.g35253.t1
Valid prediction for CodingQuarry_transcript_35626-T1
Valid prediction for snap_scaffold_23-snap.1199-T1
Valid prediction for GlimmerHMM_glimmerT_52423-T1
Valid prediction for GeneMark_model.90900_t
Valid prediction for GeneMark_model.90867_t
Valid prediction for GlimmerHMM_glimmerT_52428-T1
Valid prediction for snap_scaffold_23-snap.1177-T1
Valid prediction for GeneMark_model.90851_t
Valid prediction for GeneMark_model.90866_t
Valid prediction for GeneMark_model.90838_t
Valid prediction for GeneMark_model.90865_t
Valid prediction for GeneMark_model.90883_t
Valid prediction for snap_scaffold_23-snap.1210-T1
Valid prediction for GeneMark_model.90854_t
Valid prediction for snap_scaffold_23-snap.1203-T1
Valid prediction for GeneMark_model.90877_t
Valid prediction for GeneMark_model.90905_t
Valid prediction for GeneMark_model.90895_t
Valid prediction for snap_scaffold_23-snap.1186-T1
Valid prediction for GlimmerHMM_glimmerT_52429-T1
Valid prediction for snap_scaffold_23-snap.1181-T1
Valid prediction for snap_scaffold_23-snap.1168-T1
Valid prediction for GlimmerHMM_glimmerT_52406-T1
Valid prediction for snap_scaffold_23-snap.1191-T1
Valid prediction for snap_scaffold_23-snap.1180-T1
Valid prediction for GeneMark_model.90879_t
Valid prediction for GeneMark_model.90841_t
Valid prediction for Augustus_model.g35264.t1
Valid prediction for GeneMark_model.90892_t
Valid prediction for GeneMark_model.90898_t
Valid prediction for GeneMark_model.90904_t
Valid prediction for GeneMark_model.90894_t
Valid prediction for GeneMark_model.90852_t
Valid prediction for GeneMark_model.90844_t
Valid prediction for GeneMark_model.90885_t
Valid prediction for GeneMark_model.90888_t
Valid prediction for snap_scaffold_23-snap.1171-T1
Valid prediction for GeneMark_model.90835_t
Valid prediction for GeneMark_model.90858_t
Valid prediction for HiQ_model.g35259.t1
Valid prediction for snap_scaffold_23-snap.1190-T1
Valid prediction for GlimmerHMM_glimmerT_52408-T1
Valid prediction for snap_scaffold_23-snap.1184-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 163405, rend_intergenic: 163402  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10723, rend_intergenic: 8540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42392, rend_intergenic: 16091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61442, rend_intergenic: 57801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69047, rend_intergenic: 62963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74537, rend_intergenic: 69708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82950, rend_intergenic: 77826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98989, rend_intergenic: 91701  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171442, rend_intergenic: 155181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176333, rend_intergenic: 173875  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177469, rend_intergenic: 176858  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195336, rend_intergenic: 177919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 233347
-exon list size: 1005


building trellis

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40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 45 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 163405, rend_intergenic: 163402  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10723, rend_intergenic: 8540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42392, rend_intergenic: 16091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61442, rend_intergenic: 57801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69047, rend_intergenic: 62963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74537, rend_intergenic: 69708  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82950, rend_intergenic: 77826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98989, rend_intergenic: 91701  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171442, rend_intergenic: 155181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176333, rend_intergenic: 173875  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177469, rend_intergenic: 176858  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195336, rend_intergenic: 177919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support